|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
20
(LD)
,
DE(PLK1608)
,
OCR70,L90-5 (LD 20-1_P/O)
(D)
,
OCR70,L90-6 (LD 20-1_P/O & 20-2TC)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ddpB
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ddpB
Search strains by all related name:
ddpB b1486 ECK1480 f340 JW1481 yddR
|
General information (Go to Linear View: )
|
|
Gene Name
|
ddpB
|
|
Alternative name
|
b1486,ECK1480,f340,JW1481,yddR
|
|
Location, Length
|
1,557,931 - 1,558,953
(
-
)
;
33.58
min
;
1023
(bp) ,
340
(aa)
|
|
Product
|
D-ala-D-ala transporter subunit
|
|
Operon Name
|
ddpXABCDF
|
|
Note
|
membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane
|
|
Function
|
putative transport; Not classified
|
|
Gene Ontology
|
GO:0005215
;
transporter activity ( ddpB )
GO:0005886
;
plasma membrane ( ddpB )
GO:0006810
;
transport ( ddpB )
GO:0006857
;
oligopeptide transport ( ddpB )
GO:0015031
;
protein transport ( ddpB )
GO:0015198
;
oligopeptide transporter activity ( ddpB )
GO:0016020
;
membrane ( ddpB )
GO:0016021
;
integral to membrane ( ddpB )
|
|
PID
|
1787761
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YDDR_ECOLI
(
P77308
)
|
|
- Protein name
|
Hypothetical ABC transporter permease protein yddR.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=yddR; OrderedLocusNames=b1486;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ddpB
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Inner membrane ABC transporter permease protein yddR
|
|
PSI-BLAST
|
Dipeptide transport system permease protein dppB
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Escherichia coli B7A]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
MYRISTYL
BPD_TRANSP_INN_MEMBR
|
| Sequences |
Amino acid
FASTA format
|
0001 MTFWSILRQR CWGLVLVVAG VCVITFIISH LIPGDPARLL AGDRASDAIV ENIRQQLGLD QPLYVQFYRY
0071 VSDLFHGDLG TSIRTGRPVL EELRIFFPAT LELAFGALLL ALLIGIPLGI LSAVWRNRWL DHLVRIMAIT
0141 GISTPAFWLG LGVIVLFYGH LQILPGGGRL DDWLDPPTHV TGFYLLDALL EGNGEVFFNA LQHLILPALT
0211 LAFVHLGIVA RQIRSAMLEQ LSEDYIRTAR ASGLPGWYIV LCYALPNALI PSITVLGLAL GDLLYGAVLT
0281 ETVFAWPGMG AWVVTSIQAL DFPAVMGFAV VVSFAYVLVN LVVDLLYLWI DPRIGRGGGE
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 cagaaaaact accaactggc gatgaacaaa
-070 gaggtgaaag gctttgtgtt caatcccatg ctggaacagg tcttcaatat caataccatg agtaaataac
0001 gtgaccttct ggagtatttt acgccaacgc tgctgggggc tggtgctcgt ggtggcgggc gtctgcgtga
0071 ttacgtttat tatctcgcat ctgatccctg gtgatccggc gcggttactg gcgggtgacc gcgccagcga
0141 tgctatcgtg gaaaatattc gccagcaact gggactggac cagccactgt atgtacagtt ttaccgctac
0211 gtcagcgacc tgtttcatgg tgacctggga acatccattc gtaccgggcg tccggtgctg gaagagttgc
0281 gtatattttt cccggcgacg ctggagctgg cttttggtgc cctgctgctg gcactcctga ttggcatccc
0351 gctgggcata ctctctgcag tctggcgaaa tcgctggctg gatcatctgg tgcgaataat ggccattacc
0421 ggaatctcca cacctgcgtt ctggcttggg ctgggcgtca ttgtgctgtt ttatggtcat ctgcaaattc
0491 ttcccggcgg cggaaggctt gatgactggc tggatccacc aacgcacgtt accggctttt atctgctcga
0561 tgcgctgctt gaaggcaacg gtgaagtctt cttcaatgcg ttgcaacatc tcatcttacc ggcattaacg
0631 ctggcgttcg ttcacctggg aattgtcgct cgccagatcc gctcagcgat gctggaacaa ttgagtgaag
0701 actacattcg taccgcccgg gccagcggct tgcccggctg gtatatcgtt ttatgttatg cgctacccaa
0771 tgcgttgatc ccatcgatta ccgtattggg tttggcgctg ggcgatttgt tgtatggcgc agtgctcacc
0841 gaaaccgttt ttgcctggcc cggaatgggt gcatgggtag taacatcaat acaggcgctc gacttcccgg
0911 cagtgatggg ctttgccgtc gtggtttcat ttgcttatgt gctggtcaac ctggtggtgg atttgctcta
0981 tttgtggatt gatccgcgta tcggacgtgg aggtggtgaa tgatgctaag cgaggaaacg tccgccgtac
1051 gcccacaaaa acaaacgcga tttaacggtg caaaactggt atggatgctg aaaggcagtc cgctcaccgt
1121 gac
|
