|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
20
(LD)
,
DE(PLK1608)
,
OCR70,L90-5 (LD 20-1_P/O)
(D)
,
OCR70,L90-6 (LD 20-1_P/O & 20-2TC)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ddpD
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ddpD
Search strains by all related name:
ddpD b1484 ECK1478 f328 JW1479 yddP
|
General information (Go to Linear View: )
|
|
Gene Name
|
ddpD
|
|
Alternative name
|
b1484,ECK1478,f328,JW1479,yddP
|
|
Location, Length
|
1,556,055 - 1,557,041
(
-
)
;
33.54
min
;
987
(bp) ,
328
(aa)
|
|
Product
|
D,D-dipeptide permease system, ATP-binding component
|
|
Operon Name
|
ddpXABCDF
|
|
Note
|
ATP-binding component of ABC superfamily; GO_component: GO:0005737 - cytoplasm
|
|
Function
|
putative transport; Not classified
|
|
Gene Ontology
|
GO:0000166
;
nucleotide binding ( ddpD )
GO:0005524
;
ATP binding ( ddpD )
GO:0005886
;
plasma membrane ( ddpD )
GO:0006810
;
transport ( ddpD )
GO:0006857
;
oligopeptide transport ( ddpD )
GO:0015031
;
protein transport ( ddpD )
GO:0015197
;
peptide transporter activity ( ddpD )
GO:0015198
;
oligopeptide transporter activity ( ddpD )
GO:0015833
;
peptide transport ( ddpD )
GO:0016020
;
membrane ( ddpD )
GO:0016887
;
ATPase activity ( ddpD )
GO:0017111
;
nucleoside-triphosphatase activity ( ddpD )
|
|
PID
|
1787759
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YDDP_ECOLI
(
P77268
)
|
|
- Protein name
|
Hypothetical ABC transporter ATP-binding protein yddP.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=yddP; OrderedLocusNames=b1484;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ddpD
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain 1, Malk
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical ABC transporter ATP-binding protein yddP
|
|
PSI-BLAST
|
Methionine import ATP-binding protein metN 1
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
D-ala-D-ala transporter subunit [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
GLYCOSAMINOGLYCAN
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
ATP_GTP_A
ABC_TRANSPORTER
|
| Sequences |
Amino acid
FASTA format
|
0001 MTQPVLDIQQ LHLSFPGFNG DVHALNNVSL QINRGEIVGL VGESGSGKSV TAMLIMRLLP TGSYCVHRGQ
0071 ISLLGEDVLN AREKQLRQWR GARVAMIFQE PMTALNPTRR IGLQMMDVIR HHQPISRREA RAKAIDLLEE
0141 MQIPDAVEVM SRYPFELSGG MRQRVMIALA FSCEPQLIIA DEPTTALDVT VQLQVLRLLK HKARASGTAV
0211 LFISHDMAVV SQLCDSVYVM YAGSVIESGV TADVIHHPRH PYTIGLLQCA PEHGVPRQLL PAIPGTVPNL
0281 THLPDGCAFR DRCYAAGAQC ENVPALTACG DNNQRCACWY PQQEVISV
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 catttccggg ggcagcgatt ttgcttaccg
-070 ccgtcgggtt taatctcttt ggtgatggta ttcgcgatct gcttgacccg aaagcaggag gaaagcagtc
0001 atgacccaac ccgttctgga cattcaacaa ctgcatttga gtttccccgg ttttaacggt gatgttcacg
0071 cgctcaacaa tgtgtccttg cagattaacc gcggtgaaat tgtcggtctg gtgggagaat ccggctcagg
0141 taaatcagtc accgcaatgc tgattatgcg tctgctaccg acgggcagtt attgcgtaca tcgggggcag
0211 atttccctgc tgggagaaga tgttcttaac gcgcgggaaa aacagcttcg tcagtggcgc ggcgcacgag
0281 tggcgatgat ctttcaggaa ccgatgaccg ccctcaatcc gacacgtcga ataggtcttc agatgatgga
0351 cgtgatccgc catcatcaac caataagtcg tcgggaagcc agagctaaag cgattgacct gctggaagag
0421 atgcaaatcc cggatgccgt ggaagttatg tcgcgctatc cgtttgagct ttcaggtggt atgcgccagc
0491 gggtaatgat tgcgctggca ttctcctgcg agccgcaatt gattattgcc gacgaaccga ctacggcgct
0561 ggacgtcacg gtgcagttgc aggtactgcg tttgcttaaa cataaagccc gcgccagtgg aactgcggtt
0631 ctgttcatca gccatgatat ggccgtggtg tcgcaactgt gcgatagcgt ttacgtgatg tatgccggaa
0701 gcgtaattga aagcggcgtg acggcagacg ttatccatca tccccggcat ccgtatacca ttggtttgct
0771 gcaatgcgca ccagaacatg gagtaccacg ccagctatta cccgccattc cagggacggt accaaacctc
0841 acccatttgc ctgacggctg cgcttttcgc gatcgttgct atgcggcagg tgcacagtgt gaaaacgtcc
0911 cggcgctgac agcgtgtggt gacaacaacc agcgctgtgc ctgttggtat ccgcagcagg aggttataag
0981 tgtctgacac gttattaacg ttacgcgacg tccatatcaa tttcccggcc cgtaaaaact ggcttggtaa
1051 aactacggaa catgttcatg ccattaatgg tattgat
|
