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PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
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References (PMID)
|
|
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Deletion
|
20
(LD)
,
DE(PLK1608)
,
OCR70,L90-5 (LD 20-1_P/O)
(D)
,
OCR70,L90-6 (LD 20-1_P/O & 20-2TC)
(D)
|
|
Related gene (W3110 PEC)
|
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Gene Search
|
Search MG1655 PEC by gene name:
yncD
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
yncD
Search strains by all related name:
yncD b1451 ECK1445 f700 JW1446
|
General information (Go to Linear View: )
|
|
Gene Name
|
yncD
|
|
Alternative name
|
b1451,ECK1445,f700,JW1446
|
|
Location, Length
|
1,518,987 - 1,521,089
(
-
)
;
32.74
min
;
2103
(bp) ,
700
(aa)
|
|
Product
|
putative iron outer membrane transporter
|
|
Operon Name
|
yncD
|
|
Note
|
GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0009279 - cell outer membrane
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Function
|
putative transport; Not classified
|
|
Gene Ontology
|
GO:0004872
;
receptor activity ( yncD )
GO:0005215
;
transporter activity ( yncD )
GO:0006810
;
transport ( yncD )
GO:0009279
;
cell outer membrane ( yncD )
GO:0016020
;
membrane ( yncD )
GO:0019867
;
outer membrane ( yncD )
|
|
PID
|
1787723
|
EC number
(KEGG Pathway)
|
|
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SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YNCD_ECOLI
(
P76115
)
|
|
- Protein name
|
Probable tonB-dependent receptor yncD precursor.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=yncD; OrderedLocusNames=b1451;
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
yncD
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of The Outer Membrane Transporter Feca
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Probable tonB-dependent receptor yncD precursor
|
|
PSI-BLAST
|
Probable tonB-dependent receptor yncD precursor
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
predicted iron outer membrane transporter [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
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PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MKIFSVRQTV LPALLVLSPV VFAADEQTMI VSAAPQVVSE LDTPAAVSVV DGEEMRLATP RINLSESLTG
0071 VPGLQVQNRQ NYAQDLQLSI RGFGSRSTYG IRGIRLYVDG IPATMPDGQG QTSNIDLSSV QNVEVLRGPF
0141 SALYGNASGG VMNVTTQTGQ QPPTIEASSY YGSFGSWRYG LKATGATGDG TQPGDVDYTV STTRFTTHGY
0211 RDHSGAQKNL ANAKLGVRID EASKLSLIFN SVDIKADDPG GLTKAEWKAN PQQAPRAEQY DTRKTIKQTQ
0281 AGLRYERSLS SRDDMSVMMY AGERETTQYQ SIPMAPQLNP SHAGGVITLQ RHYQGIDSRW THRGELGVPV
0351 TFTTGLNYEN MSENRKGYNN FRLNSGMPEY GQKGELRRDE RNLMWNIDPY LQTQWQLSEK LSLDAGVRYS
0421 SVWFDSNDHY VTPGNGDDSG DASYHKWLPA GSLKYAMTDA WNIYLAAGRG FETPTINELS YRADGQSGMN
0491 LGLKPSTNDT IEIGSKTRIG DGLLSLALFQ TDTDDEIVVD SSSGGRTTYK NAGKTRRQGA ELAWDQRFAG
0561 DFRVNASWTW LDATYRSNVC NEQDCNGNRM PGIARNMGFA SIGYVPEDGW YAGTEARYMG DIMADDENTA
0631 KAPSYTLVGL FTGYKYNYHN LTVDLFGRVD NLFDKEYVGS VIVNESNGRY YEPSPGRNYG VGMNIAWRFE
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 attttctcaa ttacttaacg tattgtgccg
-070 tttcattttc cataaattta caatttcatt accatgacgg cgttttccca ttcttaacct ggcttttttc
0001 atgaagattt tttccgtccg acagaccgtt ttgcccgcac tgcttgtcct ttcccccgtt gtttttgccg
0071 ctgatgaaca gactatgatt gtcagtgccg caccgcaggt ggtttcagaa ctggataccc cagcagcagt
0141 aagcgtggtg gatggcgagg agatgcgcct ggcaacaccg cgcattaact tgtccgaatc actgaccggc
0211 gtgcctggtt tgcaggtaca aaaccggcag aactatgcgc aagatttaca gctgtcgatt cgcggatttg
0281 gctcccgctc cacttacggt attcgcggta ttcgcctgta tgtggacggt attcccgcca ccatgcccga
0351 cgggcaaggg caaacatcca acatcgattt aagcagtgtg caaaatgtgg aagtgctgcg tggccccttc
0421 tctgccctgt atggcaacgc gtctggtggg gtaatgaatg tcaccaccca gaccggacaa cagccaccaa
0491 ccattgaagc cagtagttac tacggcagtt ttggcagctg gcgctatggg ctgaaagcaa cgggcgcaac
0561 gggagacggc acacagcctg gcgatgtcga ttacaccgtc tcaaccacgc gttttacgac ccacggctat
0631 cgtgaccata gtggcgcaca gaaaaattta gccaatgcca aactgggcgt acgcattgat gaagccagca
0701 aattaagtct gattttcaat agtgtggata tcaaagcaga tgacccaggt gggctaacca aagcagaatg
0771 gaaggctaat ccacaacaag cgcctcgtgc agaacagtac gacacgcgaa aaaccatcaa gcaaactcag
0841 gctgggttgc gctatgagcg tagcctgagt tcgcgggatg atatgagtgt gatgatgtat gccggagagc
0911 gagaaacgac ccagtaccag tcaataccca tggcaccaca acttaacccg tcacatgcgg gcggcgtgat
0981 taccctgcaa cgccattacc agggaataga cagccgctgg acacaccgtg gtgaactggg cgttccggtc
1051 acgttcacta ccggcctgaa ctacgaaaac atgagtgaaa accgcaaggg ctacaataac ttccgcctga
1121 atagcggcat gccggagtac gggcaaaaag gtgagttgcg tcgcgacgaa cgcaatctga tgtggaacat
1191 cgatccctat ttacagacgc agtggcagct gagcgaaaaa ctgtcgctgg atgctggcgt gcgctacagc
1261 tccgtgtggt ttgattccaa cgaccattac gttactccgg gtaacggcga tgacagcggt gatgccagtt
1331 atcataaatg gctacctgcc ggttcgttaa aatatgcaat gaccgatgcc tggaatatct atctggcagc
1401 cgggcgaggt tttgaaacgc cgacgattaa tgagctgtct tatcgtgctg atgggcaaag cggtatgaac
1471 ttaggtttaa aaccatccac caacgataca attgagatcg gcagtaaaac gcgtattggt gatgggctgc
1541 ttagtctcgc attgtttcag accgacactg atgatgaaat tgttgtcgat agcagtagcg gtgggcgtac
1611 gacttacaaa aatgccggaa agacccgtcg tcaaggcgct gaactggcat gggatcaacg tttcgcagga
1681 gattttcgcg taaacgcgtc ctggacctgg cttgatgcga cctatcgcag caatgtttgc aatgaacagg
1751 attgtaacgg taatcggatg ccagggatcg cccgtaatat gggctttgcg tcgataggtt atgtaccgga
1821 agatggttgg tatgcaggca cggaagcgcg ttatatgggc gatattatgg cagatgatga aaatacggca
1891 aaagcgccgt cttatactct cgtcggctta ttcaccgggt ataaatacaa ttaccacaat ttaactgtgg
1961 atttatttgg tcgtgtcgat aatttattcg ataaagaata cgttggttct gtcattgtca atgagtcaaa
2031 cgggcgatat tacgaacctt cgcccggacg aaattatggt gtcggcatga atattgcgtg gagatttgag
2101 taattacctt gatgcccggt atttgccggg catttacttt aacgattgta ttgctggtat aaaatagcaa
2171 tattttgttg cataatttca gcaagacaat gtc
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