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PEC Original Annotations
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|
Essentiality
|
|
Class
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non-essential
|
|
References (PMID)
|
|
|
Deletion
|
20
(LD)
,
DE(PLK1608)
,
OCR70,L90-5 (LD 20-1_P/O)
(D)
,
OCR70,L90-6 (LD 20-1_P/O & 20-2TC)
(D)
|
|
Related gene (W3110 PEC)
|
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Gene Search
|
Search MG1655 PEC by gene name:
ydcU
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ydcU
Search strains by all related name:
ydcU b1442 ECK1436 JW1437 o313
|
General information (Go to Linear View: )
|
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Gene Name
|
ydcU
|
|
Alternative name
|
b1442,ECK1436,JW1437,o313
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|
Location, Length
|
1,511,855 - 1,512,796
(
+
)
;
32.59
min
;
942
(bp) ,
313
(aa)
|
|
Product
|
putative spermidine/putrescine transporter subunit
|
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Operon Name
|
ydcSTUV
|
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Note
|
membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane
|
|
Function
|
putative transport; Not classified
|
|
Gene Ontology
|
GO:0005215
;
transporter activity ( ydcU )
GO:0005886
;
plasma membrane ( ydcU )
GO:0006810
;
transport ( ydcU )
GO:0016020
;
membrane ( ydcU )
GO:0016021
;
integral to membrane ( ydcU )
|
|
PID
|
1787713
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YDCU_ECOLI
(
P77156
)
|
|
- Protein name
|
Hypothetical ABC transporter permease protein ydcU.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ydcU; OrderedLocusNames=b1442;
|
| Sequences |
Amino acid
FASTA format
|
0001 MAMNVLQSPS RPGLGKVSGF FWHNPGLGLF LLLLGPLMWF GIVYFGSLLT LLWQGFYTFD DFTMSVTPEL
0071 TLANIRALFN PANYDIILRT LTMAVAVTIA SAILAFPMAW YMARYTSGKM KAFFYIAVML PMWASYIVKA
0141 YAWTLLLAKD GVAQWFLQHL GLEPLLTAFL TLPAVGGNTL STSGLGRFLV FLYIWLPFMI LPVQAALERL
0211 PPSLLQASAD LGARPRQTFR YVVLPLAIPG IAAGSIFTFS LTLGDFIVPQ LVGPPGYFIG NMVYSQQGAI
0281 GNMPMAAAFT LVPIILIALY LAFVKRLGAF DAL
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TATGACAGGC GAAGAACTGC CTGCCACGCT
-070 CACGCCCGGA CAACAGGTGA TGGTTTCCTG GTCGCGTGAT GTGATGGTGC CGCTGGTTGA GGAGAGGTGA
0001 atggcgatga atgtattgca atcaccttca cgtccaggtc tgggtaaggt gtccggtttc ttctggcata
0071 atccggggct ggggctgttt ttactgctgc ttggcccgct aatgtggttt ggcattgtct atttcggctc
0141 gctgctgaca ctgttatggc agggatttta tacttttgac gatttcacca tgtcggtaac gccggaactg
0211 acgctggcga atatccgtgc gctgtttaat ccggcgaatt acgacatcat tctccgcacg ctgactatgg
0281 ctgtggcagt cactatcgcc agcgccattc tggcttttcc aatggcgtgg tatatggcgc gctataccag
0351 cgggaaaatg aaagcgtttt tttatattgc ggtaatgttg ccgatgtggg cgagctacat tgttaaagcc
0421 tatgcctgga cgttattgct ggcaaaagat ggcgtggctc agtggttttt acaacatctt gggctggaac
0491 cactgctgac tgcgttcctt acattacctg cggtgggcgg aaatacgctg tcaacttccg ggctggggcg
0561 ctttctggtg tttctctata tctggttgcc gttcatgatc ctgcccgttc aggcggcgct tgagcgtttg
0631 ccgccgtcat tgttgcaggc gtcggctgat ctcggcgcac gtccacgaca aacctttcgc tatgtggtgc
0701 tgccgctggc aatcccgggt attgccgctg gctctatctt taccttctca ctcacactgg gcgattttat
0771 cgtcccgcag ctggttggtc ctccaggata ttttatcggc aatatggttt attcccagca gggggcgatt
0841 ggcaatatgc cgatggcggc ggcattcacc ctggtgccga ttattctcat cgcactgtac ctggcgttcg
0911 tgaaacgtct gggagcgttc gatgcactct gaACGCGCAC CGTTTTTCCT CAAACTGGCG GCCTGGGGCG
0981 GCGTTGTTTT CCTACATTTT CCCATCCTGA TAATCGCCGC CTATGCGTTT AACACTGAAG AT
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