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PEC Original Annotations
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Essentiality
|
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Class
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non-essential
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References (PMID)
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|
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Deletion
|
20
(LD)
,
DE(PLK1608)
,
OCR70,L90-5 (LD 20-1_P/O)
(D)
,
OCR70,L90-6 (LD 20-1_P/O & 20-2TC)
(D)
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Related gene (W3110 PEC)
|
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Gene Search
|
Search MG1655 PEC by gene name:
ydcT
|
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Related strains
|
|
Strains Search
|
Search strains by gene name:
ydcT
Search strains by all related name:
ydcT b1441 ECK1435 JW1436 o337
|
General information (Go to Linear View: )
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Gene Name
|
ydcT
|
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Alternative name
|
b1441,ECK1435,JW1436,o337
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Location, Length
|
1,510,841 - 1,511,854
(
+
)
;
32.56
min
;
1014
(bp) ,
337
(aa)
|
|
Product
|
putative spermidine/putrescine transporter subunit
|
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Operon Name
|
ydcSTUV
|
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Note
|
ATP-binding component of ABC superfamily; GO_component: GO:0005737 - cytoplasm
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Function
|
putative transport; Not classified
|
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Gene Ontology
|
GO:0000166
;
nucleotide binding ( ydcT )
GO:0005215
;
transporter activity ( ydcT )
GO:0005524
;
ATP binding ( ydcT )
GO:0006810
;
transport ( ydcT )
GO:0016820
;
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances ( ydcT )
GO:0016887
;
ATPase activity ( ydcT )
GO:0017111
;
nucleoside-triphosphatase activity ( ydcT )
GO:0043190
;
ATP-binding cassette (ABC) transporter complex ( ydcT )
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PID
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1787712
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EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YDCT_ECOLI
(
P77795
)
|
|
- Protein name
|
Hypothetical ABC transporter ATP-binding protein ydcT.
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- Synonyms
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- Gene name
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Name=ydcT; OrderedLocusNames=b1441;
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| Sequences |
Amino acid
FASTA format
|
0001 MTYAVEFDNV SRLYGDVRAV DGVSIAIKDG EFFSMLGPSG SGKTTCLRLI AGFEQLSGGA ISIFGKPASN
0071 LPPWERDVNT VFQDYALFPH MSILDNVAYG LMVKGVNKKQ RHAMAQEALE KVALGFVHQR KPSQLSGGQR
0141 QRVAIARALV NEPRVLLLDE PLGALDLKLR EQMQLELKKL QQSLGITFIF VTHDQGEALS MSDRVAVFNN
0211 GRIEQVDSPR DLYMRPRTPF VAGFVGTSNV FDGLMAEKLC GMTGSFALRP EHIRLNTPGE LQANGTIQAV
0281 QYQGAATRFE LKLNGGEKLL VSQANMTGEE LPATLTPGQQ VMVSWSRDVM VPLVEER
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Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 AAACGCCTAT AGCAGAAGGG GGCAAGTTTG
-070 TTCCCTACAG TCGCTGGACG CAGGATTACA TTGCCATTAT GGGCGGTCGC TAACTTCGCT GGGGTGCTTT
0001 atgacgtacg cagtggagtt tgacaacgtc tcgcggttgt acggtgacgt gcgcgcagta gatggcgtca
0071 gtattgcgat aaaagatggt gagttcttct ctatgctggg gccgtccggc tccggcaaaa ccacctgcct
0141 gcgcctgatt gctggcttcg aacagctttc cggcggggct atctctatct ttggtaaacc cgccagcaat
0211 ctgccaccgt gggagcggga cgtgaatact gtctttcagg actacgcgct atttccgcat atgtcgattc
0281 ttgacaatgt cgcctatggg ctgatggtca aaggcgtgaa taaaaagcag cggcacgcaa tggcgcaaga
0351 ggcgctggag aaagtggcgt tggggtttgt acatcaacgt aaaccgtcac aactttctgg tggtcagcgc
0421 cagcgggttg ctatcgccag agcattggtg aatgaaccgc gcgtattgct gttggatgaa ccgctcggcg
0491 cactggatct caaattgcgt gagcagatgc agctggaact gaaaaaactg caacagtctc tcggtatcac
0561 ttttatcttc gttacccacg atcagggcga agcgttatcg atgtccgatc gtgtggcggt tttcaataat
0631 ggacgcattg agcaggtcga ttccccgcgc gatctctata tgcgcccgcg cacgccgttt gttgccgggt
0701 tcgttggtac atcgaatgtt tttgatggac tgatggcaga gaaactttgt ggcatgacgg gaagcttcgc
0771 cctgcgaccg gaacatatcc gcctcaacac ccctggtgaa ctgcaggcca atggcacgat ccaggcggtg
0841 caatatcagg gcgcggcaac tcgttttgaa ctgaaattga acggcggtga aaaactgctt gtgagtcagg
0911 ccaatatgac aggcgaagaa ctgcctgcca cgctcacgcc cggacaacag gtgatggttt cctggtcgcg
0981 tgatgtgatg gtgccgctgg ttgaggagag gtgaATGGCG ATGAATGTAT TGCAATCACC TTCACGTCCA
1051 GGTCTGGGTA AGGTGTCCGG TTTCTTCTGG CATAATCCGG GGCTGGGGCT GTTTTTACTG CTGC
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