|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
20
(LD)
,
DE(PLK1608)
,
OCR70,L90-5 (LD 20-1_P/O)
(D)
,
OCR70,L90-6 (LD 20-1_P/O & 20-2TC)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
hicB
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
hicB
Search strains by all related name:
hicB b1438 ECK1432 JW1433 o145 ydcQ
|
General information (Go to Linear View: )
|
|
Gene Name
|
hicB
|
|
Alternative name
|
b1438,ECK1432,JW1433,o145,ydcQ
|
|
Location, Length
|
1,507,532 - 1,507,948
(
+
)
;
32.49
min
;
417
(bp) ,
138
(aa)
|
|
Product
|
antitoxin for the HicAB toxin-antitoxin system
|
|
Operon Name
|
hicAB
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
GO:0003677
;
DNA binding ( ydcQ )
GO:0006350
;
transcription ( ydcQ )
GO:0006355
;
regulation of transcription, DNA-dependent ( ydcQ )
GO:0043565
;
sequence-specific DNA binding ( ydcQ )
|
|
PID
|
145693129
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YDCQ_ECOLI
(
P76107
)
|
|
- Protein name
|
Putative HTH-type transcriptional regulator ydcQ.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ydcQ; OrderedLocusNames=b1438, z2281, ECs2042;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ydcQ
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Chromosome Segregation Protein Spo0j From Thermus Thermophilus
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Putative HTH-type transcriptional regulator ydcQ
|
|
PSI-BLAST
|
Putative HTH-type transcriptional regulator ydcQ
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein ECs2042 [Escherichia coli O157:H7 str. Sakai]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
|
| Sequences |
Amino acid
FASTA format
|
0001 MRYPVTLTPA PEGGYMVSFV DIPEALTQGE TVAEAMEAAK DALLTAFDFY FEDNELIPLP SPLNSHDHFI
0071 EVPLSVASKV LLLNAFLQSE ITQQELARRI GKPKQEITRL FNLHHATKID AVQLAAKALG KELSLVMV
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TGAGATTAAA GAACCATTGC GTAAAGCAAT
-070 CCTGAAACAA CTCGGTTTGA GTTAATCGCC AATTAAAAAG GTTAATGACA TGCGAGAGAC AGTCGAAATT
0001 atgcgttatc ccgtcactct tacacccgcg ccggaaggcg gttatatggt ttcttttgtg gatatccctg
0071 aagcgttgac ccagggcgaa actgtcgctg aagcgatgga agcggcaaaa gatgctttac tgaccgcatt
0141 tgatttttat tttgaagata acgagcttat ccctttacct tcgccattaa atagtcacga tcactttatt
0211 gaagtacctt tgagcgtcgc ctctaaggta ttgctgttaa atgctttttt acagtcagaa atcactcagc
0281 aagagttagc caggcgaatt ggcaaaccta aacaggagat tactcgccta tttaacttgc atcatgcgac
0351 aaaaatcgac gccgtccagc tcgcggcaaa ggcgcttggc aaagagttat cgctggtgat ggtttaaTTA
0421 CAGTTAACGA AAAGTTGTCA TTTTTAACAA CTGATATAGA CTGCCGAATC ATCTGCACAT AATTACGATT
0491 CGATAATGAA AAAATACCAG CAGCTTG
|
