MG1655
W3110
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Gene Report : ydcN
PEC Original Annotations
Essentiality
     Class non-essential
     References (PMID)  
     Deletion 20 (LD)  ,  DE(PLK1608)  ,  OCR70,L90-5 (LD 20-1_P/O) (D)  ,  OCR70,L90-6 (LD 20-1_P/O & 20-2TC) (D)  
Related gene (W3110 PEC)
     Gene Search Search MG1655 PEC by gene name:  ydcN
Related strains
     Strains Search Search strains by gene name:  ydcN   Search strains by all related name:  ydcN b1434 ECK1428 JW1430 o178 o178a

General information  (Go to Linear View:)
 Gene Name ydcN  
 Alternative name b1434,ECK1428,JW1430,o178,o178a  
 Location, Length 1,504,196 - 1,504,732 (  +  ) ;   32.42 min ; 537 (bp) ,   178 (aa) Go to Linear View
 Product putative DNA-binding transcriptional regulator  
 Operon Name ydcN  
 Note  
 Function putative regulator; Not classified  
 Gene Ontology GO:0003677 ; DNA binding ( ydcN )
GO:0006350 ; transcription ( ydcN )
GO:0006355 ; regulation of transcription, DNA-dependent ( ydcN )
GO:0043565 ; sequence-specific DNA binding ( ydcN )
 PID 1787704  
 EC number
  (KEGG Pathway)   		 
SWISS-PROT  ( Show details [ 2 more] )
  botton Entry name(Acc.no) YDCN_ECOLI ( P77626 )
    -  Protein name Putative HTH-type transcriptional regulator ydcN.  
    -  Synonyms  
    -  Gene name Name=ydcN; OrderedLocusNames=b1434;  

 Linear View (Whole Mode)
View Location
   1495.0  –  1520.0 (KBP)

Homology Analysis
BLAST
    Bacteria
         GTOP ydcN (  homologous genes of other bacterias  )  
    PDB     (database updated : 2007.02.20 )
         PSI-BLAST Chain A, Crystal Structure Of Hth_3 Family Transcriptional Regulator From Vibrio Cholerae  
    SWISS-PROT     (database updated : 2007.02.20 )
         BLAST Putative HTH-type transcriptional regulator ydcN  
         PSI-BLAST Putative HTH-type transcriptional regulator ydcN
    nr     (database updated : 2007.02.20 )
         BLAST predicted DNA-binding transcriptional regulator [Escherichia coli K12]  
Pfam 28.0   (database updated : 2015-05 )
    Pfam
PROSITE
    PROSITE ASN_GLYCOSYLATION    PKC_PHOSPHO_SITE    CK2_PHOSPHO_SITE    MYRISTYL     

Other Cross-Reference
    COG COG1396K 
    EcoCyc ydcN 

Sequences
Amino acid
FASTA format 
0001 MENLARFLST TLKQLRQQRG WSLSRLAEAT GVSKAMLGQI ERNESSPTVA TLWKIATGLN VPFSTFISPP 
0071 QSATPSVYDP QQQAMVITSL FPYDPQLCFE HFSIQMASGA ISESTPHEKG VIEHVVVIDG QLDLCVDGEW 
0141 QTLNCGEGVR FAADVTHIYR NGGEQTVHFH SLIHYPRS
Nucleotide
FASTA format

View sequence out neighbor 100bp 
-100                                             CAGACGCATA GTCACCTCGT GCGTTATAGC 
-070 GTACAGGCAC CGTAGCATTT GTCCGTTATA ACGCACAAGT GATAAACTTC CGTTTTGCCG GAGGAGTCGC 
0001 atggaaaatc tcgctcgctt tttatccacc acacttaaac aactacgcca gcagcgcggc tggagtcttt 
0071 cgcgactggc agaagcgacg ggcgtttcta aagcaatgtt agggcagatt gagcgtaatg agtccagtcc 
0141 gacggtcgcg acattatgga aaattgccac cgggttgaac gtaccatttt caacatttat ttctccgccg 
0211 cagtccgcta cgccttcagt ttatgatcca caacagcagg cgatggtgat cacttcgctg tttccttatg 
0281 atccacaact ctgctttgaa cacttctcga ttcagatggc atctggtgca ataagcgaat cgacgcccca 
0351 tgagaagggg gtaatcgaac atgtcgtcgt cattgatgga caacttgatc tgtgcgttga tggggaatgg 
0421 cagaccctta attgtgggga aggcgttcga tttgctgcag acgtcacgca tatctatcgt aatggtgggg 
0491 agcaaaccgt acattttcat tccctcatcc attacccgcg cagttaaGCG GGAAAACTAT TTCGCAACGT 
0561 CGCGCTTGTG GCTAAAATAG CCGCCATTTT TCAGCTACTG GATAAGAATG TGACCGTATC TTCTCATCGA 
0631 CTTGAAC