|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
20
(LD)
,
OCR70,L90-5 (LD 20-1_P/O)
(D)
,
OCR70,L90-6 (LD 20-1_P/O & 20-2TC)
(D)
,
OCR71-1
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ycjP
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ycjP
Search strains by all related name:
ycjP b1312 ECK1307 JW1305 o280
|
General information (Go to Linear View: )
|
|
Gene Name
|
ycjP
|
|
Alternative name
|
b1312,ECK1307,JW1305,o280
|
|
Location, Length
|
1,372,114 - 1,372,956
(
+
)
;
29.57
min
;
843
(bp) ,
280
(aa)
|
|
Product
|
putative sugar transporter subunit: membrane component of ABC superfamily
|
|
Operon Name
|
ycjMNOPQRSTUV-ymjB
|
|
Note
|
putative transport system permease protein; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane
|
|
Function
|
putative transport; Not classified
|
|
Gene Ontology
|
GO:0005215
;
transporter activity ( ycjP )
GO:0005886
;
plasma membrane ( ycjP )
GO:0006810
;
transport ( ycjP )
GO:0016020
;
membrane ( ycjP )
GO:0016021
;
integral to membrane ( ycjP )
|
|
PID
|
1787571
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
YCJP_ECOLI
(
P77716
)
|
|
- Protein name
|
Hypothetical ABC transporter permease protein ycjP.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ycjP; OrderedLocusNames=b1312;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ycjP
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Inner membrane ABC transporter permease protein ycjP
|
|
PSI-BLAST
|
Hypothetical ABC transporter permease protein yurM
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
COG0395: ABC-type sugar transport system, permease component [Escherichia coli E110019]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
BPD_TRANSP_INN_MEMBR
|
| Sequences |
Amino acid
FASTA format
|
0001 MATNKRTLSR IGFYCGLALF LIITLFPFFV MLMTSFKGAK EAISLHPTLL PQQWTLEHYV DIFNPMIFPF
0071 VDYFRNSLVV SVVSSVVAVF LGILGAYALS RLRFKGRMTI NASFYTVYMF SGILLVVPLF KIITALGIYD
0141 TEMALIITMV TQTLPTAVFM LKSYFDTIPD EIEEAAMMDG LNRLQIIFRI TVPLAMSGLI SVFVYCFMVA
0211 WNDYLFASIF LSSASNFTLP VGLNALFSTP DYIWGRMMAA SLVTALPVVI MYALSERFIK SGLTAGGVKG
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TTTGCCTTTA ATGATTTAGG AAAAGCGGCG
-070 GCGATCTCGG TGGTGCTCTT CATCATTATT TTCGCTGTCA TTCTGCTGAC CAGGAAACGG GTGAACCTCA
0001 atggcaacaa ataaacgcac actcagtcgc atcggttttt actgcgggct ggcgctgttt ctcatcatca
0071 cgctgtttcc attttttgtg atgctgatga cctcgttcaa gggcgcgaaa gaggcgatct cactgcatcc
0141 tacgctgctg ccgcagcagt ggacgctgga gcattacgtc gacattttta acccgatgat tttcccgttt
0211 gtcgactact tccgtaacag tctggtggtg tctgtggttt catccgtggt ggcggtattc ctcggcattc
0281 ttggggctta cgcgctttcc cgcctgcgct ttaaaggtcg gatgaccatc aacgccagct tttacacggt
0351 gtatatgttc tctggcattt tgctggtggt gccgcttttc aaaatcatca ccgcgcttgg catttacgac
0421 actgagatgg cgctgatcat caccatggtg acgcaaactc tgcccaccgc cgtgtttatg ctgaaaagct
0491 acttcgacac catccccgat gagatcgaag aagcggcgat gatggatggc ctcaaccgtc tgcaaattat
0561 cttccgcatc accgtgccgt tggcgatgtc cgggctgata tccgtgttcg tctactgctt tatggtggcg
0631 tggaacgact atctgtttgc gtcgattttc ctctccagcg ccagcaattt caccttaccg gtgggcctga
0701 acgcgctgtt cagtacgcca gattacatct ggggacggat gatggcggcc tcactggtga ccgcattgcc
0771 ggtggtgatt atgtatgcgc tttcggaacg ttttattaag agtggtttga ccgccggtgg cgtgaagggc
0841 taaAGCGGCC AGTTTCTTTA CAAGGAGTTT TAAATGAAAA AGTTAGTAGC CACAGCACCG CGTGTTGCTG
0911 CGCTGGTTGA GTATGAAGAT CGGGCGATTT TAG
|
