|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
20
(LD)
,
OCR70,L90-5 (LD 20-1_P/O)
(D)
,
OCR70,L90-6 (LD 20-1_P/O & 20-2TC)
(D)
,
OCR71-1
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ycjO
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ycjO
Search strains by all related name:
ycjO b1311 ECK1306 JW1304 o293 o293b
|
General information (Go to Linear View: )
|
|
Gene Name
|
ycjO
|
|
Alternative name
|
b1311,ECK1306,JW1304,o293,o293b
|
|
Location, Length
|
1,371,246 - 1,372,127
(
+
)
;
29.55
min
;
882
(bp) ,
293
(aa)
|
|
Product
|
putative sugar transporter subunit: membrane component of ABC superfamily
|
|
Operon Name
|
ycjMNOPQRSTUV-ymjB
|
|
Note
|
putative binding-protein dependent transport protein; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane
|
|
Function
|
putative transport; Not classified
|
|
Gene Ontology
|
GO:0005215
;
transporter activity ( ycjO )
GO:0005886
;
plasma membrane ( ycjO )
GO:0006810
;
transport ( ycjO )
GO:0016020
;
membrane ( ycjO )
GO:0016021
;
integral to membrane ( ycjO )
|
|
PID
|
1787570
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
3
more]
)
|
Entry name(Acc.no)
|
UGPA_ECOLI
(
P10905
)
|
|
- Protein name
|
SN-glycerol-3-phosphate transport system permease protein ugpA.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ugpA; OrderedLocusNames=b3452;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ycjO
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Inner membrane ABC transporter permease protein ycjO
|
|
PSI-BLAST
|
Inner membrane ABC transporter permease protein ycjO
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
predicted sugar transporter subunit: membrane component of ABC superfamily [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
BPD_TRANSP_INN_MEMBR
|
| Sequences |
Amino acid
FASTA format
|
0001 MNRLFSGRSD MPFALLLLAP SLLLLGGLVA WPMVSNIEIS FLRLPLNPNI ESTFVGVSNY VRILSDPGFW
0071 HSLWMTVWYT ALVVAGSTVL GLAVAMFFNR EFRLRKTARS LVILSYVTPS ISLVFAWKYM FNNGYGIVNY
0141 LGVDLLHLYE QAPLWFDNPG SSFVLVVLFA IWRYFPYAFI SFLAILQTID KSLYEAAEMD GANAWQRFRI
0211 VTLPAIMPVL ATVVTLRTIW MFYMFADVYL LTTKVDILGV YLYKTAFAFN DLGKAAAISV VLFIIIFAVI
0281 LLTRKRVNLN GNK
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TCACCGTGGG TAAAGCCGAT CTCTCTACTA
-070 CGCTGCAAGC GAGCCAGAAA AAACTGGATG AACTGATCGA ACAGCACTAA ACCCAGGACA GGAATCCGCA
0001 atgaacaggc ttttttcagg tcgttccgat atgccctttg cgctgctgct tctcgcgccc agcttattac
0071 tgctgggcgg tctggtggcg tggccgatgg tgtcgaatat cgaaatcagt tttttacgtc tgccgctcaa
0141 tcccaacatc gagtcaacgt ttgttggggt gagcaactat gtgcgtatcc tctccgatcc cggcttctgg
0211 cattcgctgt ggatgacggt ctggtatacc gcgctggtgg tggcgggcag caccgtgctc gggctggcgg
0281 tggcgatgtt tttcaaccgc gagttccgcc tgcgcaaaac cgcgcgttcg ctggtgatcc tctcctacgt
0351 aacgccgtcc atttcgctgg tgttcgcctg gaaatacatg ttcaacaacg gctacggcat tgttaactac
0421 ctcggcgtcg atcttctgca tctctatgag caggcaccgc tgtggttcga taatccgggc agtagctttg
0491 tgctggtggt gctgttcgcc atctggcgct acttcccgta tgcctttatc tcgtttctgg cgattttgca
0561 gaccatcgac aaatcgctgt acgaagcggc agagatggat ggcgctaatg cctggcaacg gtttcgtatc
0631 gtcacgctgc ccgcaattat gccggtcctg gcgacggtgg tgacactgcg caccatctgg atgttctaca
0701 tgttcgcgga tgtttatttg ctgacgacca aggtcgatat tctcggtgta tatctctaca aaaccgcctt
0771 tgcctttaat gatttaggaa aagcggcggc gatctcggtg gtgctcttca tcattatttt cgctgtcatt
0841 ctgctgacca ggaaacgggt gaacctcaat ggcaacaaat aaACGCACAC TCAGTCGCAT CGGTTTTTAC
0911 TGCGGGCTGG CGCTGTTTCT CATCATCACG CTGTTTCCAT TTTTTGTGAT GCTGATGACC TCGTTCAAGG
0981 GC
|
