|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
20
(LD)
,
OCR70
(D)
,
OCR70,L90-5 (LD 20-1_P/O)
(D)
,
OCR70,L90-6 (LD 20-1_P/O & 20-2TC)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
puuR
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
puuR
Search strains by all related name:
puuR b1299 ECK1294 JW1292 o185 ycjC
|
General information (Go to Linear View: )
|
|
Gene Name
|
puuR
|
|
Alternative name
|
b1299,ECK1294,JW1292,o185,ycjC
|
|
Location, Length
|
1,359,935 - 1,360,492
(
+
)
;
29.31
min
;
558
(bp) ,
185
(aa)
|
|
Product
|
DNA-binding transcriptional repressor for the puu divergon
|
|
Operon Name
|
puuDR
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
GO:0003677
;
DNA binding ( puuR )
GO:0005515
;
protein binding ( puuR )
GO:0006350
;
transcription ( puuR )
GO:0006355
;
regulation of transcription, DNA-dependent ( puuR )
GO:0043565
;
sequence-specific DNA binding ( puuR )
|
|
PID
|
1787557
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
YCJC_ECOLI
(
P38522
;
P76839; P77417
)
|
|
- Protein name
|
Putative HTH-type transcriptional regulator ycjC.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ycjC; OrderedLocusNames=b1299, SF1304, S1386;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
puuR
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of Apo-Hppe
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
HTH-type transcriptional regulator puuR
|
|
PSI-BLAST
|
HTH-type transcriptional regulator puuR
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
DNA-binding transcriptional repressor [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
AMIDATION
|
| Sequences |
Amino acid
FASTA format
|
0001 MSDEGLAPGK RLSEIRQQQG LSQRRAAELS GLTHSAISTI EQDKVSPAIS TLQKLLKVYG LSLSEFFSEP
0071 EKPDEPQVVI NQDDLIEMGS QGVSMKLVHN GNPNRTLAMI FETYQPGTTT GERIKHQGEE IGTVLEGEIV
0141 LTINGQDYHL VAGQSYAINT GIPHSFSNTS AGICRIISAH TPTTF
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 CGCTTTCGCG TATATTGTTC GAGGGCTTTA
-070 TCACCGCTTG TCAGCACCAT ATCGCTGAAA AACAGCGACT CTGACCACTA CAGTTTAAGG AAATGCAAAT
0001 atgagtgatg agggactggc gccaggaaaa cgcttgtcgg aaatccgcca gcagcagggg ctttcacaac
0071 gtcgtgccgc cgaactctcc gggctgactc acagtgctat cagtacgata gaacaagata aagtcagccc
0141 tgccatcagt acgctgcaaa agctgctgaa ggtgtatggt ctgtcactct cggaattctt ttccgagccg
0211 gaaaaacctg atgagccgca ggtcgtcatt aatcaggacg acttaattga gatgggtagt cagggtgtgt
0281 caatgaagct ggttcataac ggtaacccga atcgcacgct ggcgatgatc tttgaaacgt accagccggg
0351 cacaaccact ggggaaagaa ttaagcatca gggtgaggaa ataggcactg tactggaagg tgaaattgtt
0421 ctgacgatta atggtcagga ttaccacctc gtcgcggggc aaagttatgc cattaatacc ggcatcccgc
0491 acagtttcag taatacgtcg gcaggtattt gccgaattat cagcgcccat acgcccacca cgttttaaTC
0561 TTTTTGTTCT GTAAGCCGGG TAAGCGCAAT GCGCCCGGCA ATCTATACAC AAAATCATTC AAGTTGCATC
0631 AAGGCGGCAA GTGAGCGAAT CCCGATGA
|
