|
PEC Original Annotations
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|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Deletion
|
OCR68
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
oppC
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
oppC
Search strains by all related name:
oppC b1245 ECK1239 JW1237 stkB
|
General information (Go to Linear View: )
|
|
Gene Name
|
oppC
|
|
Alternative name
|
b1245,ECK1239,JW1237,stkB
|
|
Location, Length
|
1,301,858 - 1,302,766
(
+
)
;
28.06
min
;
909
(bp) ,
302
(aa)
|
|
Product
|
oligopeptide transporter subunit
|
|
Operon Name
|
oppABCDF
|
|
Note
|
homolog of Salmonella oligopeptide transport permease protein; membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0000270 - peptidoglycan metabolic process
|
|
Function
|
putative transport; Not classified
|
|
Gene Ontology
|
GO:0005215
;
transporter activity ( oppC )
GO:0005886
;
plasma membrane ( oppC )
GO:0006810
;
transport ( oppC )
GO:0006857
;
oligopeptide transport ( oppC )
GO:0015031
;
protein transport ( oppC )
GO:0015198
;
oligopeptide transporter activity ( oppC )
GO:0016020
;
membrane ( oppC )
GO:0016021
;
integral to membrane ( oppC )
|
|
PID
|
1787498
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
OPPC_ECOLI
(
P77664
)
|
|
- Protein name
|
Oligopeptide transport system permease protein oppC.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=oppC; OrderedLocusNames=b1245, z2021, ECs1745;
|
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
oppC
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Oligopeptide transport system permease protein oppC
|
|
PSI-BLAST
|
Dipeptide transport system permease protein dppC
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
homolog of Salmonella oligopeptide transport permease protein [Escherichia coli O157:H7 EDL933]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
BPD_TRANSP_INN_MEMBR
|
|
MMBR References
|
J Bacteriol. 1985;161(2):484-92.
Genetic analysis of Escherichia coli oligopeptide transport mutants.
Andrews JC, Short SA.
(
2981814
)
|
J Bacteriol. 1983;153(3):1548-51.
Genetic organization of the oligopeptide permease (opp) locus of Salmonella typhimurium and Escherichia coli.
Hogarth BG, Higgins CF.
(
6338001
)
|
| Sequences |
Amino acid
FASTA format
|
0001 MMLSKKNSET LENFSEKLEV EGRSLWQDAR RRFMHNRAAV ASLIVLVLIA LFVILAPMLS QFAYDDTDWA
0071 MMSSAPDMES GHYFGTDSSG RDLLVRVAIG GRISLMVGVA AALVAVVVGT LYGSLSGYLG GKVDSVMMRL
0141 LEILNSFPFM FFVILLVTFF GQNILLIFVA IGMVSWLDMA RIVRGQTLSL KRKEFIEAAQ VGGVSTSGIV
0211 IRHIVPNVLG VVVVYASLLV PSMILFESFL SFLGLGTQEP LSSWGALLSD GANSMEVSPW LLLFPAGFLV
0281 VTLFCFNFIG DGLRDALDPK DR
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 CCATCCTGGT TGGTGCTTTA ACCATTTTGT
-070 TTAATGCCAT TGTCGATGTG CTATATGCGG TTATCGACCC GAAAATCCGT TACTGATACT GGAGCTCGCG
0001 atgatgttaa gtaagaaaaa cagcgagacg ctggaaaatt tcagtgaaaa gctggaggtc gaagggcgca
0071 gcttgtggca ggacgcacgt cgacgtttta tgcataaccg tgcggcggtt gccagtctga tagtgctggt
0141 gctgatcgcg ttatttgtaa tcctggcacc gatgctttcc cagtttgcct atgacgatac tgactgggcg
0211 atgatgtcca gcgccccgga tatggagtcc ggtcactact ttggtactga ctcatccggt cgcgacctgc
0281 ttgtgcgcgt tgcgattggc gggcgtatct cactcatggt cggtgttgct gcggcactgg tggctgtggt
0351 cgtcgggaca ctttatggtt cgctttccgg ttatctgggc ggtaaagtgg attcggtaat gatgcgtctg
0421 ctggaaatcc tcaactcctt cccattcatg ttcttcgtca ttttgctggt gacctttttc ggtcaaaaca
0491 tcctgctgat tttcgtggcg ataggcatgg tttcctggct ggatatggct cgtattgtgc gtgggcaaac
0561 cctgagtctg aagcgcaaag agtttattga ggcggcacaa gttggcggtg tatcgacatc gggcattgtt
0631 attcgccaca ttgtgccgaa tgtactcggt gtggtggtgg tctacgcatc acttctggtg cccagcatga
0701 tcctctttga atctttcctt agcttcctgg ggttgggtac gcaagagccg ttaagcagct ggggtgcatt
0771 gctgagtgat ggcgcgaact cgatggaagt ctctccatgg ttattgttgt tcccagcggg attcctcgtg
0841 gtgacgctgt tttgtttcaa ctttatcggc gatggcttgc gtgatgccct cgacccgaaa gatcgttaaG
0911 GAGTGCAGCC ATGAGCGTAA TTGAAACTGC AACTGTGCCG CTCGCACAAC AACAGGCTGA CGCACTGCTG
0981 AACGTGAAAG ATTTGCGTGT CACCTTTAG
|
