|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
17
(LD)
,
OCR57,60-3 (LD 17C_CRS)
(D)
,
OCR57,60-4 (LD 17C_P/O)
(D)
,
OCR59
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
insF1
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
insF1
Search strains by all related name:
insF1 b1026 ECK0299 insF
|
General information (Go to Linear View: )
|
|
Gene Name
|
insF1
|
|
Alternative name
|
b1026,ECK0299,insF
|
|
Location, Length
|
1,093,498 - 1,094,364
(
-
)
;
23.57
min
;
867
(bp) ,
288
(aa)
|
|
Product
|
IS3 transposase B
|
|
Operon Name
|
insEF-4E-4F-4
|
|
Note
|
|
|
Function
|
IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related
|
|
Gene Ontology
|
GO:0003676
;
nucleic acid binding ( insF1 )
GO:0003677
;
DNA binding ( insF1 )
GO:0006310
;
DNA recombination ( insF1 )
GO:0006313
;
transposition, DNA-mediated ( insF1 )
GO:0015074
;
DNA integration ( insF1 )
|
|
PID
|
1787263
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
| Sequences |
Amino acid
FASTA format
|
0001 MKYVFIEKHQ AEFSIKAMCR VLRVARSGWY TWCQRRTRIS TRQQFRQHCD SVVLAAFTRS KQRYGAPRLT
0071 DELRAQGYPF NVKTVAASLR RQGLRAKASR KFSPVSYRAH GLPVSENLLE QDFYASGPNQ KWAGDITYLR
0141 TDEGWLYLAV VIDLWSRAVI GWSMSPRMTA QLACDALQMA LWRRKRPRNV IVHTDRGGQY CSADYQAQLK
0211 RHNLRGSMSA KGCCYDNACV ESFFHSLKVE CIHGEHFISR EIMRATVFNY IECDYNRWRR HSWCGGLSPE
0281 QFENKNLA
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 tgtctaccga gattgcacgt ctcaaacgcc
-070 agctggcaga acgggatgaa gagctggcta tcctccaaaa ggccgcgaca tacttcgcga agcgcctgaa
0001 atgaagtatg tctttattga aaaacatcag gctgagttca gcatcaaagc aatgtgccgc gtgctccggg
0071 tggcccgcag cggctggtat acgtggtgtc agcggcggac aaggataagc acgcgtcagc agttccgcca
0141 acactgcgac agcgttgtcc tcgcggcttt tacccggtca aaacagcgtt acggtgcccc acgcctgacg
0211 gatgaactgc gtgctcaggg ttaccccttt aacgtaaaaa ccgtggcggc aagcctgcgc cgtcagggac
0281 tgagggcaaa ggcctcccgg aagttcagcc cggtcagcta ccgcgcacac ggcctgcctg tgtcagaaaa
0351 tctgttggag caggattttt acgccagtgg cccgaaccag aagtgggcag gagacatcac gtacttacgt
0421 acagatgaag gctggctgta tctggcagtg gtcattgacc tgtggtcacg tgccgttatt ggctggtcaa
0491 tgtcgccacg catgacggcg caactggcct gcgatgccct gcagatggcg ctgtggcggc gtaagaggcc
0561 ccggaacgtt atcgttcaca cggaccgtgg aggccagtac tgttcagcag attatcaggc gcaactgaag
0631 cggcataatc tgcgtggaag tatgagcgca aaaggttgct gctacgataa tgcctgcgtg gaaagcttct
0701 ttcattcgct gaaagtggaa tgtatccatg gagaacactt tatcagccgg gaaataatgc gggcaacggt
0771 gtttaattat atcgaatgtg attacaatcg gtggcggcgg cacagttggt gtggcggcct cagtccggaa
0841 caatttgaaa acaagaacct cgcttaggcc tgtgtccata ttacgtgggt aggatcaaaa tgccgcttta
0911 tggtgactca caaaaattca ccacatccct cacaaccacc ttattacgcc cggtctc
|
