|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
20
(LD)
,
DE(PLK1608)
,
OCR70,L90-5 (LD 20-1_P/O)
(D)
,
OCR70,L90-6 (LD 20-1_P/O & 20-2TC)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ydcI
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ydcI
Search strains by all related name:
ydcI b1422 ECK1416 f354 JW5226
|
General information (Go to Linear View: )
|
|
Gene Name
|
ydcI
|
|
Alternative name
|
b1422,ECK1416,f354,JW5226
|
|
Location, Length
|
1,492,172 - 1,493,095
(
-
)
;
32.16
min
;
924
(bp) ,
307
(aa)
|
|
Product
|
putative DNA-binding transcriptional regulator
|
|
Operon Name
|
ydcI
|
|
Note
|
putative transcriptional regulator LYSR-type; GO_function: GO:0016563 - transcription activator activity; GO_function: GO:0016564 - transcription repressor activity; GO_process: GO:0006350 - transcription
|
|
Function
|
putative regulator; Not classified
|
|
Gene Ontology
|
GO:0003677
;
DNA binding ( ydcI )
GO:0003700
;
transcription factor activity ( ydcI )
GO:0006350
;
transcription ( ydcI )
GO:0006355
;
regulation of transcription, DNA-dependent ( ydcI )
|
|
PID
|
87081904
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YDCI_ECOLI
(
P77171
)
|
|
- Protein name
|
Putative HTH-type transcriptional regulator ydcI.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ydcI; OrderedLocusNames=b1422;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ydcI
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain , Cofactor Binding Fragment Of Cysb From Klebsiella Aerogenes
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Putative HTH-type transcriptional regulator ydcI
|
|
PSI-BLAST
|
Putative HTH-type transcriptional regulator ywbI
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
probable regulatory protein b1422 - Escherichia coli
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
LEUCINE_ZIPPER
HTH_LYSR_FAMILY
|
| Sequences |
Amino acid
FASTA format
|
0001 MEKNSLFSQR IRLRHLHTFV AVAQQGTLGR AAETLNLSQP ALSKTLNELE QLTGARLFER GRQGAQLTLP
0071 GEQFLTHAVR VLDAINTAGR SLHRKEGLNN DVVRVGALPT AALGILPSVI GQFHQQQKET TLQVATMSNP
0141 MILAGLKTGE IDIGIGRMSD PELMTGLNYE LLFLESLKLV VRPNHPLLQE NVTLSRVLEW PVVVSPEGTA
0211 PRQHSDALVQ SQGCKIPSGC IETLSASLSR QLTVEYDYVW FVPSGAVKDD LRHATLVALP VPGHGAGEPI
0281 GILTRVDATF SSGCQLMINA IRKSMPF
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 taacataatt gctttaattg ttaataatat
-070 tttgcaatca agttatcata atcaaacaac ttcacttgtc agcgacaccg cttcgttttt aacatcgctt
0001 atggaaaaaa atagtctgtt tagtcagcgc atccgtttgc gccaccttca tacattcgta gctgtcgcac
0071 aacaaggaac tttggggcgc gcggctgaaa cccttaattt gagtcaacct gcgctctcta agacattgaa
0141 tgaactggag cagctgactg gcgctcgctt gtttgagcgt ggtcgtcagg gggcgcaact taccttaccc
0211 ggcgaacaat ttttaacgca tgcagtcaga gttcttgacg ccatcaacac tgccggacgg tcgcttcatc
0281 gtaaagaagg tcttaataat gatgtcgtca gggttggtgc actacctact gcggcactgg ggatattacc
0351 ttcggttata ggtcagtttc atcagcaaca aaaagagacg accttgcaag ttgcgacaat gagtaaccct
0421 atgattctgg cgggtttaaa aaccggggaa atcgatatcg gcattggtcg gatgtcagat cctgaactga
0491 tgaccgggct taattacgaa ctgctgtttc ttgaatcgtt gaagctggtt gtccgcccta atcacccgct
0561 acttcaggag aacgtaacgc taagccgggt gctggaatgg ccggtcgttg tatcaccaga aggcactgcg
0631 ccacgccagc attcagatgc attagtgcag agccagggct gtaaaattcc ttcgggttgt atcgaaacgc
0701 tgtctgcttc gctatctcgt caacttacgg ttgaatacga ttacgtgtgg tttgtccctt ctggcgctgt
0771 aaaagacgac ctgcgtcatg ccacgctggt ggccctgcct gttccgggac atggtgcagg cgaaccgatt
0841 ggaatactga cccgcgtaga tgcgacgttc tcttctggtt gccagttgat gattaacgct attcgaaaat
0911 caatgccgtt ctgaaaggtg aagggatctg tcgatccctc cttgaacatt ttcacaccgt agcgaaacta
0981 actggttcac ccgctccgcg aggttctgcc gacacagaat gttt
|
