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Total Hit : 180 |
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151-180
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Symbol |
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RadC
|
yeeS, yfjY, yicR, ykfG |
4 |
PF04002.11 |
Kerrison ND, Finn RD, Iyer LM, Zhang D, Aravind L |
RadC-like JAB domain |
Radical_SAM
|
aslB, bioB, epmB, hemN, lipA, miaB, moaA, pflA, pflC, queE, rimO, rlmN, thiH, ybiY, ydeM, yggW, ygiQ, yhcC, yjjW |
19 |
PF04055.17 |
Bateman A |
Radical SAM superfamily |
Radical_SAM_C
|
yhcC |
1 |
PF16199.1 |
Coggill P |
Radical_SAM C-terminal domain |
Radical_SAM_N
|
ygiQ |
1 |
PF08497.6 |
Wuster A |
Radical SAM N-terminal |
RapA_C
|
rapA |
1 |
PF12137.4 |
Assefa S, Bateman A, Coggill P |
RNA polymerase recycling family C-term.. |
RBFA
|
rbfA |
1 |
PF02033.14 |
Mian N, Bateman A |
Ribosome-binding factor A |
RbsD_FucU
|
fucU, rbsD |
2 |
PF05025.9 |
Moxon SJ, Bateman A |
RbsD / FucU transport protein family |
RcnB
|
rcnB |
1 |
PF11776.4 |
Mistry J |
Nickel/cobalt transporter regulator |
RcsC
|
rcsC |
1 |
PF09456.6 |
Coggill P |
RcsC Alpha-Beta-Loop (ABL) |
RcsD_ABL
|
rcsD |
1 |
PF16359.1 |
Eberhardt RY |
RcsD-ABL domain |
RcsF
|
rcsF |
1 |
PF16358.1 |
Eberhardt RY |
RcsF lipoprotein |
RdgC
|
rdgC |
1 |
PF04381.8 |
Kerrison ND |
Putative exonuclease, RdgC |
RecA
|
recA |
1 |
PF00154.17 |
Sonnhammer ELL |
recA bacterial DNA recombination protein |
Recombinase
|
ybcK |
1 |
PF07508.9 |
Studholme D |
Recombinase |
RecO_C
|
recO |
1 |
PF02565.11 |
Mian N, Bateman A |
Recombination protein O C terminal |
RecO_N
|
recO |
1 |
PF11967.4 |
Mian N, Bateman A |
Recombination protein O N terminal |
RecQ_Zn_bind
|
recQ |
1 |
PF16124.1 |
Eberhardt RY |
RecQ zinc-binding |
RecR
|
recR |
1 |
PF02132.11 |
Mian N, Bateman A |
RecR protein |
RecT
|
recT |
1 |
PF03837.10 |
Aravind L |
RecT family |
RecX
|
recX |
1 |
PF02631.12 |
Mian N, Bateman A |
RecX family |
Redoxin
|
dsbE, tpx |
2 |
PF08534.6 |
Mistry J |
Redoxin |
Reductase_C
|
hcaD |
1 |
PF14759.2 |
Eberhardt R |
Reductase C-terminal |
RelA_SpoT
|
relA, spoT |
2 |
PF04607.13 |
Kerrison ND |
Region found in RelA / SpoT proteins |
RelB
|
dinJ, relB |
2 |
PF04221.8 |
Mifsud W |
RelB antitoxin |
ResIII
|
hsdR, uvrB, yejH, yoaA |
4 |
PF04851.11 |
Finn RD, Mifsud W |
Type III restriction enzyme, res subunit |
Resolvase
|
pinE, pinQ, pinR, ybcK |
4 |
PF00239.17 |
Finn RD, Griffiths-Jones SR, Bateman A |
Resolvase, N terminal domain |
Response_reg
|
arcA, arcB, atoC, baeR, barA, basR, cheB, cheY, cpxR, creB, cusR, dcuR, dpiA, evgA, evgS, fimZ, glnG, glrR, kdpE, narL, narP, ompR, phoB, phoP, qseB, rcsB, rcsC, rssB, rstA, torR, torS, uhpA, uvrY, yedW, yehT, ypdB, zraR |
37 |
PF00072.20 |
Sonnhammer ELL, Griffiths-Jones SR, Finn R, Fenech M |
Response regulator receiver domain |
RF-1
|
arfB, prfA, prfB |
3 |
PF00472.16 |
Bateman A, Finn RD |
RF-1 domain |
RF3_C
|
prfC |
1 |
PF16658.1 |
Punta M |
Class II release factor RF3, C-termina.. |
RhaA
|
rhaA |
1 |
PF06134.7 |
Moxon SJ |
L-rhamnose isomerase (RhaA) |
RhaT
|
rhaT |
1 |
PF06379.8 |
Moxon SJ |
L-rhamnose-proton symport protein (RhaT) |
RHH_1
|
nikR, ybfE, yiiE |
3 |
PF01402.17 |
Bateman A |
Ribbon-helix-helix protein, copG family |
Rhodanese
|
glpE, pspE, sseA, yceA, ygaP, yibN, ynjE |
9 |
PF00581.16 |
Bateman A |
Rhodanese-like domain |
Rhodanese_C
|
yceA |
1 |
PF12368.4 |
Gavin OL |
Rhodanase C-terminal |
Rhomboid
|
glpG |
1 |
PF01694.18 |
Sohrmann M, Bateman A |
Rhomboid family |
Rhomboid_N
|
glpG |
1 |
PF12122.4 |
Assefa S, Bateman A |
Cytoplasmic N-terminal domain of rhomb.. |
Rho_N
|
rho |
1 |
PF07498.8 |
Finn, RD |
Rho termination factor, N-terminal dom.. |
Rho_RNA_bind
|
rho |
1 |
PF07497.8 |
Finn, RD |
Rho termination factor, RNA-binding do.. |
RHS
|
rhsA, rhsB, rhsC, rhsD |
4 |
PF03527.10 |
Griffiths-Jones SR |
RHS protein |
RHS_repeat
|
rhsA, rhsB, rhsC, rhsD |
27 |
PF05593.10 |
Yeats C |
RHS Repeat |
RibD_C
|
ribD |
1 |
PF01872.13 |
Enright A, Ouzounis C, Bateman A |
RibD C-terminal domain |
Ribonuclease_P
|
rnpA |
1 |
PF00825.14 |
Bateman A |
Ribonuclease P |
Ribonuclease_T2
|
rna |
1 |
PF00445.14 |
Finn RD |
Ribonuclease T2 family |
Ribonucleas_3_3
|
rnc |
1 |
PF14622.2 |
Wood V, Coggill P |
Ribonuclease-III-like |
Ribonuc_L-PSP
|
ridA, rutC, tdcF, yjgH, yoaB |
5 |
PF01042.17 |
Bateman A, Finn RD, Kerrison ND |
Endoribonuclease L-PSP |
Ribonuc_red_lgC
|
nrdA, nrdE |
3 |
PF02867.11 |
Finn RD, Griffiths-Jones SR |
Ribonucleotide reductase, barrel domain |
Ribonuc_red_lgN
|
nrdA, nrdE |
2 |
PF00317.17 |
Finn RD, Griffiths-Jones SR |
Ribonucleotide reductase, all-alpha do.. |
Ribonuc_red_sm
|
nrdB, nrdF |
2 |
PF00268.17 |
Finn RD, Griffiths-Jones SR |
Ribonucleotide reductase, small chain |
Ribosomal_L1
|
rplA |
1 |
PF00687.17 |
Bateman A |
Ribosomal protein L1p/L10e family |
Ribosomal_L10
|
rplJ |
1 |
PF00466.16 |
Finn RD |
Ribosomal protein L10 |
Total Hit : 180 |
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1-50
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151-180
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