|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCR63
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ymfA
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ymfA
Search strains by all related name:
ymfA b1122 ECK1108 f156 JW5164
|
General information (Go to Linear View: )
|
|
Gene Name
|
ymfA
|
|
Alternative name
|
b1122,ECK1108,f156,JW5164
|
|
Location, Length
|
1,180,487 - 1,180,948
(
-
)
;
25.44
min
;
462
(bp) ,
153
(aa)
|
|
Product
|
conserved inner membrane protein
|
|
Operon Name
|
ymfA-ycfZ
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
GO:0005886
;
plasma membrane ( ymfA )
GO:0016020
;
membrane ( ymfA )
GO:0016021
;
integral to membrane ( ymfA )
|
|
PID
|
87081835
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
YMFA_ECOLI
(
P75962
)
|
|
- Protein name
|
Hypothetical protein ymfA.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ymfA; OrderedLocusNames=b1122;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ymfA
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Inner membrane protein ymfA
|
|
PSI-BLAST
|
Inner membrane protein ymfA
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
predicted inner membrane protein [Escherichia coli W3110]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MSQDSKVFFR IFLGIGLVLI LISVVVFYNQ FTYSKDAIHT EGVIVDTVWH SSHSHRTGKD GSWYPVVAFR
0071 PTPDYTLIFN SSIGSDFYED SEGDKVNVYY SPGHPEKAEI NNPWVNFFKW GFIGIMGVIF IAVGLLISMP
0141 SSKKSRRKRK SRP
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 catttatgaa gagtattatc agaagctgaa
-070 agcaggacgt taattcagca agcgggcggt ggtattaccg cccgtttttt agttagcaag gatgtggcta
0001 atgagtcagg acagtaaagt tttctttcgt atattcctcg gtatcggtct ggtactgatc ctcatttctg
0071 ttgttgtctt ttataaccag ttcacctata gcaaagacgc gattcatacc gaaggcgtca ttgttgatac
0141 cgtctggcac tccagtcatt ctcatcgcac gggtaaagat ggttcgtggt atcccgtcgt tgcctttcga
0211 ccgacgccag attacacgct aattttcaat tcgagtatcg gcagcgattt ttatgaagac agcgaaggcg
0281 ataaagttaa tgtttattat tctcccgggc atcctgaaaa ggctgagata aataacccgt gggttaattt
0351 ttttaaatgg gggtttatcg gcattatggg cgttattttt atcgccgtcg gtttattaat aagtatgccc
0421 tcctctaaaa aatcacgcag gaaacggaag tcccgcccat gaaaaaattc attatactgc tcagtttact
0491 gatactcctg cctctgacag cagccagcaa gccattaatt ccaataatga agacactttt tacggacgtt
0561 ac
|
