|
PEC Original Annotations
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|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
LD3-18-1
(LD)
,
DE(relA-argA)216
,
OCL44,45-1
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ygdH
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ygdH
Search strains by all related name:
ygdH b2795 ECK2790 JW2766
|
General information (Go to Linear View: )
|
|
Gene Name
|
ygdH
|
|
Alternative name
|
b2795,ECK2790,JW2766
|
|
Location, Length
|
2,924,330 - 2,925,694
(
+
)
;
63.03
min
;
1365
(bp) ,
454
(aa)
|
|
Product
|
conserved protein, UPF0717 family
|
|
Operon Name
|
ygdH
|
|
Note
|
|
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Function
|
|
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Gene Ontology
|
GO:0005515
;
protein binding ( ygdH )
|
|
PID
|
1789159
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YGDH_ECOLI
(
P37350
;
Q46921
)
|
|
- Protein name
|
Hypothetical protein ygdH.
|
|
- Synonyms
|
|
|
- Gene name
|
OrderedLocusNames=b2795, c3361, z4112, ECs3655, SF2808, S3003;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ygdH
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of The Conserved Hypothetical Protein Tt1887 From Thermus Thermophilus Hb8
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein ygdH
|
|
PSI-BLAST
|
Hypothetical protein ygdH
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein Z4112 [Escherichia coli O157:H7 EDL933]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MITHISPLGS MDMLSQLEVD MLKRTASSDL YQLFRNCSLA VLNSGSLTDN SKELLSRFEN FDINVLRRER
0071 GVKLELINPP EEAFVDGRII RALQANLFAV LRDILFVYGQ IHNTVRFPNL NLDNSVHITN LVFSILRNAR
0141 ALHVGEAPNM VVCWGGHSIN ENEYLYARRV GNQLGLRELN ICTGCGPGAM EAPMKGAAVG HAQQRYKDSR
0211 FIGMTEPSII AAEPPNPLVN ELIIMPDIEK RLEAFVRIAH GIIIFPGGVG TAEELLYLLG ILMNPANKDQ
0281 VLPLILTGPK ESADYFRVLD EFVVHTLGEN ARRHYRIIID DAAEVARQMK KSMPLVKENR RDTGDAYSFN
0351 WSMRIAPDLQ MPFEPSHENM ANLKLYPDQP VEVLAADLRR AFSGIVAGNV KEVGIRAIEE FGPYKINGDK
0421 EIMRRMDDLL QGFVAQHRMK LPGSAYIPCY EICT
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ATTTTGCGTG CTGGATTCAC GCAGAAGGTT
-070 GTGAAAGGTC ATCAGGCAGG GCTATTGTAA TCAAAGGGAA TGACGATATT CGTCCCATAA GGAGTTTTTC
0001 ttgattacac atattagccc gcttggctcc atggatatgt tgtcgcagct ggaagtggat atgcttaaac
0071 gcaccgccag cagcgacctc tatcaactgt ttcgcaactg ttcacttgcc gtactgaact ccggtagttt
0141 gaccgataac agcaaagaat tgctgtctcg ttttgaaaat ttcgatatta acgtcttgcg ccgtgaacgc
0211 ggcgtaaagc tggaactgat taatcccccg gaagaggctt ttgtcgatgg gcgaattatt cgcgctttgc
0281 aggccaactt gttcgcggtc ctgcgtgaca ttctcttcgt ttacgggcaa atccataaca ccgttcgttt
0351 tcccaacctg aatctcgaca actccgtcca catcactaac ctggtctttt ccatcttgcg taacgctcgc
0421 gcgctgcatg tgggtgaagc gccaaatatg gtggtctgct ggggcggtca ctcaattaac gaaaacgagt
0491 atttgtatgc ccgtcgcgtc ggaaaccagc tgggcctgcg tgagctgaat atctgcaccg gctgtggtcc
0561 gggagcgatg gaagcgccga tgaaaggtgc tgcggtcgga cacgcgcagc agcgttacaa agacagtcgt
0631 tttattggta tgacagagcc gtcgattatc gccgctgaac cgcctaaccc gctggtcaac gaattgatca
0701 tcatgccaga tatcgaaaaa cgtctggaag cgtttgtccg tatcgctcac ggtatcatta tcttccctgg
0771 cggtgtgggt acggcagaag agttgctcta tttgctggga attttaatga acccggccaa caaagatcag
0841 gttttaccat tgatcctcac cggcccgaaa gagagcgccg actacttccg cgtactggac gagtttgtcg
0911 tgcatacgct gggtgaaaac gcgcgccgcc attaccgcat catcattgat gacgccgctg aagtcgctcg
0981 tcagatgaaa aaatcgatgc cgctggtgaa agaaaatcgc cgtgatacag gcgatgccta cagctttaac
1051 tggtcaatgc gcattgcgcc agatttgcaa atgccgtttg agccgtctca cgagaatatg gctaatctga
1121 agctttaccc ggatcaacct gttgaagtgc tggctgccga cctgcgccgt gcgttctccg gtattgtggc
1191 gggtaacgta aaagaagtcg gtattcgcgc cattgaagag tttggtcctt acaaaatcaa cggcgataaa
1261 gagattatgc gtcgtatgga cgacctgcta cagggttttg ttgcccagca tcgtatgaag ttgccaggct
1331 cagcctacat cccttgctac gaaatctgca cgtaaTCTCC GCTCCCCCGG TGACGTTTGT TGCCGGGTTT
1401 TCTCGTTTTT GGTCACTTAC TCATCAACTC ATTTCATTTG TTATATGAAT GTTTCTTACC ACCCT
|
