|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
20
(LD)
,
DE(PLK1608)
,
OCR70,L90-5 (LD 20-1_P/O)
(D)
,
OCR70,L90-6 (LD 20-1_P/O & 20-2TC)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ydbC
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ydbC
Search strains by all related name:
ydbC b1406 ECK1399 JW1403
|
General information (Go to Linear View: )
|
|
Gene Name
|
ydbC
|
|
Alternative name
|
b1406,ECK1399,JW1403
|
|
Location, Length
|
1,472,245 - 1,473,105
(
+
)
;
31.73
min
;
861
(bp) ,
286
(aa)
|
|
Product
|
putative oxidoreductase, NAD(P)-binding
|
|
Operon Name
|
ydbC
|
|
Note
|
putative dehydrogenase
|
|
Function
|
putative enzyme; Not classified
|
|
Gene Ontology
|
GO:0005515
;
protein binding ( ydbC )
GO:0016491
;
oxidoreductase activity ( ydbC )
|
|
PID
|
1787674
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
YDBC_ECOLI
(
P25906
)
|
|
- Protein name
|
Putative oxidoreductase ydbC
|
|
- Synonyms
|
EC 1.-.-.-
|
|
- Gene name
|
Name=ydbC; OrderedLocusNames=b1406;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ydbC
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of Human 20alpha-Hsd In Ternary Complex With Nadp And 20alpha-Hydroxy-Progesterone
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Putative oxidoreductase ydbC
|
|
PSI-BLAST
|
Aldo-keto reductase family 1 member C1 homolog
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
predicted oxidoreductase, NAD(P)-binding [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
CK2_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MSSNTFTLGT KSVNRLGYGA MQLAGPGVFG PPRDRHVAIT VLREALALGV NHIDTSDFYG PHVTNQIIRE
0071 ALYPYSDDLT IVTKIGARRG EDASWLPAFS PAELQKAVHD NLRNLGLDVL DVVNLRVMMG DGHGPAEGSI
0141 EASLTVLAEM QQQGLVKHIG LSNVTPTQVA EARKIAEIVC VQNEYNIAHR ADDAMIDALA HDGIAYVPFF
0211 PLGGFTPLQS STLSDVAASL GATPMQVALA WLLQRSPNIL LIPGTSSVAH LRENMAAEKL HLSEEVLSTL
0281 DGISRE
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GCAACTCATC CAGTAATCTT GTTTACACCT
-070 TCGCATTATT TATCTCTTTT CGTTTCTATA CTGATTTTTC TTAATCCGTT TTATTACAGG GCAGGGTGCG
0001 atgagcagca atacatttac tctcggtaca aaatccgtta accgtcttgg ttatggcgcg atgcaactgg
0071 caggtcctgg agtttttggc cccccacgag atcgccacgt cgctataacc gtgctgcgtg aggcgctggc
0141 attgggcgtc aatcatattg ataccagcga cttttatggt ccgcacgtca ccaatcagat tatccgcgaa
0211 gcgctttatc cttactctga cgacctgaca attgtcacta aaattggtgc gcggcgtgga gaggacgcat
0281 cctggttgcc cgcattttct ccggcagagc tgcaaaaagc ggtgcacgat aatctacgta atctcgggct
0351 ggacgtgctg gatgtggtta acctgcgcgt tatgatgggg gatggtcatg gcccagcgga aggatcgatt
0421 gaggccagcc tgaccgtgct ggcagagatg caacaacaag gcctggtaaa acatattggc ctgagcaacg
0491 tcacaccgac gcaggttgca gaggcgcgca agattgccga aattgtctgt gtgcaaaacg aatacaacat
0561 cgcgcaccgt gctgatgatg caatgattga tgctttggcc cacgatggca ttgcctacgt gccgttcttc
0631 ccgctcgggg gctttacacc gctgcaatcg tccacacttt ccgatgttgc tgcgagcctg ggtgcaacac
0701 caatgcaggt ggcgctggcg tggctgttac agcgttcacc gaatattttg ctgatcccag ggacgtcttc
0771 ggttgcgcat ttacgggaga atatggctgc tgaaaaattg catctttctg aggaagtgtt gtctacgttg
0841 gatggtattt cgcgagaata aCGAATATAC AAAAGGGAAA GATGCATTTC CCTTTTTTTC TTTTTTAATG
0911 GCATGGAGTG CATATGTTGA AGGCCAGGAA TTGCGGCTGG ATACGTTTAC T
|
