|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCR47-1
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ybeR
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ybeR
Search strains by all related name:
ybeR b0645 ECK0638 JW0640 o235 o235a
|
General information (Go to Linear View: )
|
|
Gene Name
|
ybeR
|
|
Alternative name
|
b0645,ECK0638,JW0640,o235,o235a
|
|
Location, Length
|
675,934 - 676,641
(
+
)
;
14.57
min
;
708
(bp) ,
235
(aa)
|
|
Product
|
hypothetical protein
|
|
Operon Name
|
ybeR-djlB
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
1786865
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
YBER_ECOLI
(
P77627
)
|
|
- Protein name
|
Hypothetical protein ybeR.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ybeR; OrderedLocusNames=b0645;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ybeR
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein ybeR
|
|
PSI-BLAST
|
Hypothetical protein ybeR
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein b0645 [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MDMESQKILF ALSTPMEIRN ECCLPSHSSP KMYLGTCFFD LSSSWGIDDR DDLLRTIHRM IDNGHAARLA
0071 GFYHRWFRYS PCEWRDYLAE LNEQGQAYAQ FVASTAECCG EGGIKAWDYV RMGFLSRMGV LNNWLSEEES
0141 LWIQSRIHLR ALRYYSNWRQ YFAGYTFGRQ YWQSPEDDHL PLLREFLARK EYDDSGNDMF YQLFASDDAY
0211 YPTLSWQPLA YYSACPETLK DMSDL
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GCCTTATTTT ATGCGTATTA TGTCGCGTCA
-070 GAAAAGTATA AATAAACGAG CCTCGCAATG CGGCTAATAT TCATTTAATG AATATTTAAG GATAAATTAT
0001 atggacatgg agtcgcaaaa aatattgttt gcactttcca ctccgatgga aatacgcaat gaatgctgtt
0071 taccttcgca ttcatcaccc aaaatgtatt taggtacatg cttttttgac ctttcttcct catggggaat
0141 tgatgaccgt gatgacctgc tgcgcacaat tcaccgaatg atcgataacg gtcatgccgc tcggttggca
0211 gggttttatc accgctggtt tcgttattcg ccatgtgaat ggcgtgacta tcttgctgaa ctaaatgagc
0281 aaggtcaggc ttatgcgcaa tttgtcgcca gcaccgccga atgctgtggc gaagggggaa tcaaagcctg
0351 ggattatgtc cggatgggtt ttttaagccg aatgggcgta cttaataact ggttgagcga agaagaaagt
0421 ctatggatcc agtcgcgcat tcatctacgg gctctacgtt attatagtaa ctggcggcaa tactttgccg
0491 gttatacctt tggtcggcaa tattggcagt ctcccgaaga tgatcatctg cctttattac gcgaattctt
0561 agcgcgtaaa gaatacgacg attccggcaa tgatatgttt tatcaattat ttgccagtga tgatgcgtat
0631 taccctacct tgtcctggca accattggct tactattctg catgcccgga aacgcttaag gatatgagcg
0701 acctatgaAA AATTGCTGGA AGATCCTCGA TATAGAGGAA ACGACTGACG TCGATATTAT CCGCCGCGCT
0771 TATCTGGCGC TGTTACCGTC CTTTCATCCA GAAACCGA
|
