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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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Deletion
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20
(LD)
,
DE(PLK1608)
,
OCR70,L90-5 (LD 20-1_P/O)
(D)
,
OCR70,L90-6 (LD 20-1_P/O & 20-2TC)
(D)
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Related gene (W3110 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
stfR
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Related strains
|
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Strains Search
|
Search strains by gene name:
stfR
Search strains by all related name:
stfR b1372 ECK1367 JW1366 o1120b o1122 ynaB
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General information (Go to Linear View: )
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Gene Name
|
stfR
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|
Alternative name
|
b1372,ECK1367,JW1366,o1120b,o1122,ynaB
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Location, Length
|
1,427,073 - 1,430,435
(
+
)
;
30.76
min
;
3363
(bp) ,
1120
(aa)
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Product
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Rac prophage; predicted tail fiber protein
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Operon Name
|
lomR_2-stfR-tfaR
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Note
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Function
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Phage or Prophage Related
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Gene Ontology
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GO:0005198
;
structural molecule activity ( stfR )
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PID
|
87081892
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EC number
(KEGG Pathway)
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SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
STFR_ECOLI
(
P76072
;
P77560
)
|
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- Protein name
|
Side tail fiber protein homolog from lambdoid prophage Rac.
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- Synonyms
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- Gene name
|
Name=stfR; OrderedLocusNames=b1372;
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Homology Analysis
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BLAST
|
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Bacteria
|
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GTOP
|
stfR
(
homologous genes of other bacterias
)
|
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PDB
(database updated :
2007.02.20
)
|
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PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Side tail fiber protein homolog from lambdoid prophage Rac
|
|
PSI-BLAST
|
Collagen alpha-2
|
|
nr
(database updated :
2007.02.20
)
|
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BLAST
|
predicted tail fiber protein [Escherichia coli W3110]
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
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PROSITE
|
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PROSITE
|
ASN_GLYCOSYLATION
GLYCOSAMINOGLYCAN
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
PROKAR_LIPOPROTEIN
|
| Sequences |
Amino acid
FASTA format
|
0001 MAVKISGVLK DGTGKPVQNC TIQLKAKRNS TTVVVNTLAS ENPDEAGRYS MDVEYGQYSV ILLVEGFPPS
0071 HAGTITVYED SQPGTLNDFL GAMTEDDARP EALRRFELMV EEVARNASAV AQNTAAAKKS ASDASTSARE
0141 AATHAADAAD SARAASTSAG QAASSAQSAS SSAGTASTKA TEASKSAAAA ESSKSAAATS AGAAKTSETN
0211 ASASLQSAAT SASTATTKAS EAATSARDAA ASKEAAKSSE TNASSSASSA ASSATAAGNS AKAAKTSETN
0281 ARSSETAAGQ SASAAAGSKT AAASSASAAS TSAGQASASA TAAGKSAESA ASSASTATTK AGEATEQASA
0351 AARSASAAKT SETNAKASET SAESSKTAAA SSASSAASSA SSASASKDEA TRQASAAKSS ATTASTKATE
0421 AAGSATAAAQ SKSTAESAAT RAETAAKRAE DIASAVALED ASTTKKGIVQ LSSATNSTSE TLAATPKAVK
0491 SAYDNAEKRL QKDQNGADIP DKGCFLNNIN AVSKTDFADK RGMRYVRVNA PAGATSGKYY PVVVMRSAGS
0561 VSELASRVII TTATRTAGDP MNNCEFNGFV MPGGWTDRGR YAYGMFWQYQ NNERAIHSIM MSNKGDDLRS
0631 VFYVDGAAFP VFAFIEDGLS ISAPGADLVV NDTTYKFGAT NPATECIAAD VILDFKSGRG FYESHSLIVN
0701 DNLSCKKLFA TDEIVARGGN QIRMIGGEYG ALWRNDGAKT YLLLTNQGDV YGGWNTLRPF AIDNATGELV
0771 IGTKLSASLN GNALTATKLQ TPRRVSGVEF DGSKDITLTA AHVAAFARRA TDTYADADGG VPWNAESGAY
0841 NVTRSGDSYI LVNFYTGVGS CRTLQMKAHY RNGGLFYRSS RDGYGFEEDW AEVYTSKNLP PESYPVGAPI
0911 PWPSDTVPSG YALMQGQAFD KSAYPKLAAA YPSGVIPDMR GWTIKGKPAS GRAVLSQEQD GIKSHTHSAS
0981 ASSTDLGTKT TSSFDYGTKS TNNTGAHTHS VSGSTNSAGA HTHSLANVNT ASANSGAGSA STRLSVVHNQ
1051 NYATSSAGAH THSLSGTAAS AGAHAHTVGI GAHTHSVAIG SHGHTITVNA AGNAENTVKN IAFNYIVRLA
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GACGGTTTCA TCGTGGGTGT CGGTTATAAG
-070 TTCTGATTAG CCAGGTAACA CAGTGTTATG ACAGCCCGCC GGTTCAGGCG GGCTTTTTTG TGGGGTGAAT
0001 atggcagtaa agatttcagg tgtactgaaa gacggcacag gaaaaccggt acagaactgc acaatccagc
0071 tgaaagcaaa acgtaacagc accacggtgg tggtgaacac gctggcctca gaaaatccgg atgaagccgg
0141 gcgttacagc atggacgttg agtacggtca gtacagcgtt attctgttgg tggaaggatt cccgccgtca
0211 catgccggga ccattaccgt gtatgaagat tctcaacccg gtacgctgaa tgattttctc ggtgccatga
0281 cggaggatga tgcccgtccg gaggcactgc gccgttttga actgatggtg gaagaggtgg cgcgtaacgc
0351 gtccgcggtg gcacagaaca cggcagccgc gaagaagtca gccagtgatg ccagcacatc agcccgtgag
0421 gcggcaaccc atgcggctga tgctgcggac tcagcacgcg cagccagcac gtcagccgga caggccgcgt
0491 cgtcggctca gtcagcgtct tccagcgcag gaacggcatc aacaaaggcc actgaagcat caaaaagtgc
0561 tgccgctgca gagtcctcaa aaagcgcggc ggccaccagt gccggtgcgg cgaaaacgtc agaaacgaat
0631 gcttcagcgt cactacaatc agcagccaca tctgcatcca ccgcgaccac gaaggcatca gaagctgcga
0701 cctcggcccg ggatgcggcg gcctcaaaag aagcggcaaa atcatcagaa acgaacgcat catcaagcgc
0771 cagtagtgca gcttcctcgg caacggcggc aggaaattcc gcgaaggcgg caaaaacgtc cgagacgaac
0841 gccaggtctt ctgaaacggc agcgggacag agcgcctcgg ctgcggcagg ctcaaaaaca gcggctgcgt
0911 cgtctgccag tgcagcgtca acaagtgccg ggcaggcctc agccagtgcc accgccgccg gaaaatcggc
0981 agaaagcgcc gcatcgtctg cttcaacagc cacaacgaag gctggcgaag ccactgaaca ggccagcgca
1051 gcagcgaggt ctgcttccgc agcgaagaca tccgaaacga acgcgaaagc gtcggaaaca agcgcagaat
1121 cctcaaaaac ggctgccgca tcgtcagcca gttcggcggc gtcatcggca tcatcggcgt ctgcttcaaa
1191 agatgaggcg accagacaag cgtcagcagc gaagagcagc gccacgacgg catccacgaa ggcgacagag
1261 gctgctggca gtgcgacggc ggcagctcag agcaaaagta cggcggaatc cgcggcaacg cgcgccgaga
1331 cagcagctaa acgggcagag gatattgcat ccgccgtggc gcttgaggat gcaagtacga cgaaaaaggg
1401 gatagtacag ctcagcagtg cgaccaacag tacgtctgaa acgctggcgg caacgccaaa ggcagtaaaa
1471 tcagcctatg acaatgcaga gaaacgtctg cagaaagacc agaacggcgc tgatataccc gataagggat
1541 gcttcctgaa caacattaac gcggtcagta aaacagactt tgctgataag cgtggtatgc gttatgtgcg
1611 ggttaacgct cctgcaggtg caacatctgg aaaatattac cctgttgttg ttatgcgttc tgctggctca
1681 gtaagcgaac tggcatcaag agtcattatc accacggcaa cgcgaaccgc aggcgatccg atgaataact
1751 gcgagtttaa cggatttgtt atgcctggtg gctggactga cagggggcgt tatgcttatg gcatgttctg
1821 gcaatatcaa aacaatgaac gagccattca ctcaataatg atgagtaata agggcgatga tttgcgctct
1891 gtgttctatg ttgatggcgc tgctttccct gtttttgcgt ttattgaaga tggcctgtca atatccgcac
1961 ctggtgctga tctcgttgtt aatgatacga cctataagtt tggggcaaca aatccggcga ctgaatgtat
2031 cgcggcggac gttatccttg attttaagag tgggcgtggt ttttatgagt ctcattcgtt aatcgttaac
2101 gataacttgt cgtgcaaaaa actttttgcc acagacgaaa ttgtagcgcg tggtggtaat cagattcgaa
2171 tgataggtgg ggagtatggt gcattatggc gtaatgatgg cgctaaaact tacctgctgc ttaccaatca
2241 aggtgatgtt tatggtggct ggaatacatt aagaccgttt gctattgata acgcaaccgg cgaactggtt
2311 attggaacca aactgtccgc aagtctgaac ggtaatgcat taacagcaac aaagctgcaa acgccaagac
2381 gggtttctgg tgttgagttt gatggttcca aagatattac tttaaccgcc gcgcatgtgg ctgcttttgc
2451 cagaagggca acggatacat atgccgatgc ggatggtggc gttccatgga atgccgaatc tggcgcttac
2521 aatgtcaccc gctctggcga cagctatatt ctggttaact tctataccgg agtcggaagt tgccggaccc
2591 tgcagatgaa ggcgcattac agaaatggtg gtctgttcta ccgttcttca agagacggtt atggttttga
2661 ggaagactgg gcagaagttt atacctcgaa aaatcttcca ccagaaagct acccagtcgg cgcaccaatc
2731 ccgtggccat cagataccgt tccgtctggt tatgccctga tgcaggggca ggcttttgac aaatctgctt
2801 acccgaaact tgcagccgct tatccgtcag gcgtgatccc tgatatgcgt ggctggacga ttaagggcaa
2871 acctgccagt ggtcgggccg tattgtctca ggaacaggac ggcattaaat cgcataccca cagcgccagc
2941 gcatccagta cagatttggg gacgaaaacc acatcgtcgt ttgattacgg cactaaatcc acgaataaca
3011 ccggggcaca tacacacagt gtgagcggct ctacaaactc ggctggagca cacacacact cactagccaa
3081 cgtgaacacg gctagtgcta actccggtgc tggtagtgca tcaacaagat tgtctgttgt gcataatcaa
3151 aactatgcaa catcatctgc tggcgcacat acccactcac tgtccggcac tgctgcaagc gcaggtgcac
3221 acgcgcatac tgtcggtatt ggtgctcata cgcactccgt tgcgattggt tcacatggac acaccatcac
3291 cgttaacgct gctggtaacg cggaaaacac cgtcaaaaac atcgcattta actatattgt gaggcttgca
3361 taaTGGCATT CAGAATGAGT GAACAACCAC GGACCATAAA AATTTATAAT CTGCTGGCCG GAACTAATGA
3431 ATTTATTGGT GAAGGTGATG CATATATTCC GCC
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