|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Microbiol Mol Biol Rev. 1998;62(3):814-984
Linkage map of Escherichia coli K-12, edition 10: the traditional map.
Berlyn MK.
(
9729611
)
|
|
|
Deletion
|
LD3-5-1
(LD)
,
OCL78
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
fliD
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
fliD
Search strains by all related name:
fliD b1924 ECK1923 flbC JW1909 rfs
|
General information (Go to Linear View: )
|
|
Gene Name
|
fliD
|
|
Alternative name
|
b1924,ECK1923,flbC,JW1909,rfs
|
|
Location, Length
|
2,001,896 - 2,003,302
(
+
)
;
43.15
min
;
1407
(bp) ,
468
(aa)
|
|
Product
|
flagellar filament capping protein
|
|
Operon Name
|
fliDST
|
|
Note
|
flagellar biosynthesis; filament capping protein; enables filament assembly; GO_component: GO:0019861 - flagellum; GO_process: GO:0009296 - flagellum assembly; GO_process: GO:0042330 - taxis
|
|
Function
|
putative structure; Surface structures
|
|
Gene Ontology
|
GO:0006928
;
cell motility ( fliD )
GO:0007155
;
cell adhesion ( fliD )
GO:0009288
;
flagellin-based flagellum ( fliD )
GO:0009296
;
flagellum biogenesis ( fliD )
GO:0042995
;
cell projection ( fliD )
GO:0043064
;
flagellum organization and biogenesis ( fliD )
|
|
PID
|
1788233
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
FLID_ECOLI
(
P24216
;
P94745
)
|
|
- Protein name
|
Flagellar hook-associated protein 2
|
|
- Synonyms
|
HAP2, Filament cap protein, Flagellar cap protein
|
|
- Gene name
|
Name=fliD; Synonyms=flbC, flaV; OrderedLocusNames=b1924;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
fliD
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of The Atp Binding Domain Of Prrb From Mycobacterium Tuberculosis
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Flagellar hook-associated protein 2
|
|
PSI-BLAST
|
Keratin type II cuticular Hb4
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
flagellar protein [Escherichia coli]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
GLYCOSAMINOGLYCAN
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
AMIDATION
|
|
MMBR References
|
J Gen Microbiol. 1992;138(6):1051-65.
Subdivision of flagellar region III of the Escherichia coli and Salmonella typhimurium chromosomes and identification of two additional flagellar genes.
Kawagishi I, Muller V, Williams AW, Irikura VM, Macnab RM.
(
1527488
)
|
| Sequences |
Amino acid
FASTA format
|
0001 MASISSLGVG SGLDLSSILD SLTAAQKATL TPISNQQSSF TAKLSAYGTL KSALTTFQTA NTALSKADLF
0071 SATSTTSSTT AFSATTAGNA IAGKYTISVT HLAQAQTLTT RTTRDDTKTA IATSDSKLTI QQGGDKDPIT
0141 IDISAANSSL SGIRDAINNA KAGVSASIIN VGNGEYRLSV TSNDTGLDNA MTLSVSGDDA LQSFMGYDAS
0211 ASSNGMEVSV AAQNAQLTVN NVAIENSSNT ISDALENITL NLNDVTTGNQ TLTITQDTSK AQTAIKDWVN
0281 AYNSLIDTFS SLTKYTAVDA GADSQSSSNG ALLGDSTLRT IQTQLKSMLS NTVSSSSYKT LAQIGITTDP
0351 SDGKLELDAD KLTAALKKDA SGVGALIVGD GKKTGITTTI GSNLTSWLST TGIIKAATDG VSKTLNKLTK
0421 DYNAASDRID AQVARYKEQF TQLDVLMTSL NSTSSYLTQQ FENNSNSK
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ATTCCCGCTA TTAAAAAAAA CAATTAAACG
-070 TAAACTTTGC GCAATTCAGA CCGATAACCC CGGTATTCGT TTTACGTGTC GAAAGATAAA AGGAAATCGC
0001 atggcaagta tttcatcgct gggagtcggg tcaggtctgg atttaagttc catccttgat agcctcaccg
0071 ccgcgcaaaa agcgacgcta acccccattt caaatcagca atcgtcgttt accgctaaac ttagcgccta
0141 cggtacgctg aaaagcgcgc tgacgacttt ccagaccgcc aatactgcat tgtctaaagc cgatcttttt
0211 tccgccacca gcaccaccag cagcaccacc gcgttcagtg ccaccactgc gggtaacgcc atcgccggga
0281 aatacaccat cagcgtcacc catctggcgc aggcgcaaac cctgaccacg cgcaccacca gagacgatac
0351 gaaaacggcg atcgccacca gcgacagtaa actcaccatt caacaaggcg gcgacaaaga tccgattacc
0421 attgatatca gcgcggctaa ctcatcgtta agcgggatcc gtgatgccat caacaacgca aaagcaggcg
0491 taagcgcaag catcattaac gtgggtaacg gtgaatatcg tctgtcagtc acatcaaatg acaccggcct
0561 tgataatgcg atgacactct cggtcagcgg tgatgatgcg ctacaaagtt ttatgggcta tgacgccagt
0631 gccagcagca acggtatgga ggtctcggtt gccgcccaga atgcgcagct gacagtcaac aacgtcgcca
0701 tcgagaacag cagcaacacc atcagcgacg cgctggaaaa catcaccctg aacctgaacg atgtcaccac
0771 gggcaaccag acgctaacca tcactcagga cacctccaaa gcgcaaacgg cgattaaaga ctgggtgaat
0841 gcctacaact cgctaataga taccttcagc agcctgacca aatacaccgc cgtagatgcg ggagctgata
0911 gccagagttc tagcaatggt gcactgctcg gcgactccac gctgcggacg attcagacgc agttgaaatc
0981 gatgctgagt aataccgtca gttcttccag ctataaaacg ttggcgcaga ttggtatcac gaccgatccc
1051 agcgatggca aactggaact ggatgccgac aaactcaccg ctgcactgaa aaaagatgcc agcggcgtag
1121 gtgcattgat tgttggcgat ggtaaaaaaa ccggcatcac gaccaccatc ggcagcaacc tgaccagttg
1191 gctttcgaca acgggcatta ttaaagccgc taccgatggc gttagtaaga ccctgaataa attaactaaa
1261 gactacaacg ccgccagcga tcgcattgat gcgcaggtcg ctcgctacaa agaacaattt acccaactgg
1331 acgttttaat gacctcgtta aacagcacca gcagctactt aacgcagcag ttcgaaaaca acagtaattc
1401 caagtaaGCA ATATTCATCG GGAGACAGGT CATGTACGCG GCAAAAGGCA CCCAGGCCTA TGCACAAATT
1471 GGCGTCGAAA GCGCCGTAAT GAGCGCCAGC CAGCAGC
|
