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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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J Bacteriol. 1998;180(24):6625-34.
Topological analysis of the aerobic membrane-bound formate dehydrogenase of Escherichia coli.
Benoit S, Abaibou H, Mandrand-Berthelot MA.
(
9852007
)
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Deletion
|
OCR07
(D)
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Related gene (W3110 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
fdoI
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Related strains
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Strains Search
|
Search strains by gene name:
fdoI
Search strains by all related name:
fdoI b3892 ECK3885 JW3863
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General information (Go to Linear View: )
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Gene Name
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fdoI
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Alternative name
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b3892,ECK3885,JW3863
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Location, Length
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4,079,248 - 4,079,883
(
-
)
;
87.92
min
;
636
(bp) ,
211
(aa)
|
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Product
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formate dehydrogenase-O, cytochrome b556 subunit
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Operon Name
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fdoGHI-fdhE
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Note
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formate dehydrogenase, cytochrome B556 (FDO) subunit; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009061 - anaerobic respiration; GO_process: GO:0017004 - cytochrome complex assembly
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Function
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enzyme; Energy metabolism, carbon: Anaerobic respiration
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Gene Ontology
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GO:0005506
;
iron ion binding ( fdoI )
GO:0005886
;
plasma membrane ( fdoI )
GO:0006118
;
electron transport ( fdoI )
GO:0006810
;
transport ( fdoI )
GO:0008863
;
formate dehydrogenase activity ( fdoI )
GO:0009326
;
formate dehydrogenase complex ( fdoI )
GO:0016020
;
membrane ( fdoI )
GO:0016021
;
integral to membrane ( fdoI )
GO:0045333
;
cellular respiration ( fdoI )
GO:0046872
;
metal ion binding ( fdoI )
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PID
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1790325
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EC number
(KEGG Pathway)
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SWISS-PROT
(
Show details
)
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Entry name(Acc.no)
|
FDOI_ECOLI
(
P32174
)
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- Protein name
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Formate dehydrogenase, cytochrome b556(FDO) subunit
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- Synonyms
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Formate dehydrogenase-O gamma subunit, FDH-Z gamma subunit, Aerobic formate dehydrogenase cytochrome b556 subunit
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- Gene name
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Name=fdoI; OrderedLocusNames=b3892, c4842, z5434, ECs4818;
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MMBR References
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J Bacteriol. 1995;177:7141-7149
Expression and characterization of the Escherichia coli fdo locus and a possible role for aerobic formate dehydrogenase.
Abaibou, H., J. Pommier, S. Benoit, G. Giordano, and M.-A. Mandrand-Berthelot.
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Nucleic Acids Res. 1993;21:3391-3398
Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes.
Plunkett, G., V. D. Burland, D. L. Daniels, and F. R. Blattner.
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| Sequences |
Amino acid
FASTA format
|
0001 MKRRDTIVRY TAPERINHWI TAFCFILAAV SGLGFLFPSF NWLMQIMGTP QLARILHPFV GVVMFASFII
0071 MFFRYWHHNL INRDDIFWAK NIRKIVVNEE VGDTGRYNFG QKCVFWAAII FLVLLLVSGV IIWRPYFAPA
0141 FSIPVIRFAL MLHSFAAVAL IVVIMVHIYA ALWVKGTITA MVEGWVTSAW AKKHHPRWYR EVRKTTEKKA
0211 E
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Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ctacctttgc ggccagtatc ttccactacg
-070 tgggtgtcgg tccgaaccgt gcggatgagg aagagaataa tctgcacgaa gagaaagacg aggagcgcaa
0001 atgaaacgac gtgacaccat cgtgcgctac accgcgccgg aacgtatcaa ccactggatc accgccttct
0071 gcttcatcct ggcggcggtg agcgggctgg gctttttgtt cccgtccttc aactggttga tgcaaatcat
0141 gggcacaccg cagctggcgc gaattctgca cccgtttgtc ggcgtggtta tgtttgcctc gttcatcatc
0211 atgtttttcc gttactggca tcacaaccta atcaatcggg atgatatctt ttgggcgaag aatattcgta
0281 agatcgtcgt caacgaggaa gtaggtgaca ccgggcgtta taacttcggt cagaaatgcg ttttctgggc
0351 ggcgattatt ttcctggttc tgctgctggt gagcggcgtg attatctggc gtccttattt tgcgcctgct
0421 ttctcaatcc cggtgatccg attcgcgtta atgctgcatt catttgccgc agtggcgtta attgtggtta
0491 tcatggtgca tatctacgcc gccctttggg tgaaaggcac gattaccgcc atggtggaag gatgggttac
0561 cagcgcctgg gcgaagaaac atcacccgcg ctggtaccgt gaggtccgca agacaacgga aaagaaagct
0631 gaatgagtat tcgcataatc ccgcaagatg agctgggttc aagcgagaaa cgtacggcgg atatgattcc
0701 gccgttattg ttccctcggc tcaagaattt atacaa
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