|
PEC Original Annotations
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|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
DE(PLK1608)
,
OCL90-1
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
dmsD
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
dmsD
Search strains by all related name:
dmsD b1591 ECK1586 JW5262 o207 o430b ynfI
|
General information (Go to Linear View: )
|
|
Gene Name
|
dmsD
|
|
Alternative name
|
b1591,ECK1586,JW5262,o207,o430b,ynfI
|
|
Location, Length
|
1,662,530 - 1,663,144
(
+
)
;
35.83
min
;
615
(bp) ,
204
(aa)
|
|
Product
|
twin-argninine leader-binding protein for DmsA and TorA
|
|
Operon Name
|
ynfEFGH-dmsD
|
|
Note
|
|
|
Function
|
putative enzyme; Not classified
|
|
Gene Ontology
|
GO:0005737
;
cytoplasm ( dmsD )
GO:0005886
;
plasma membrane ( dmsD )
GO:0016020
;
membrane ( dmsD )
GO:0051085
;
chaperone cofactor-dependent protein folding ( dmsD )
|
|
PID
|
87081942
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YNFI_ECOLI
(
P76174
;
P77270
)
|
|
- Protein name
|
Hypothetical protein ynfI precursor.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ynfI; OrderedLocusNames=b1591, z2581, ECs2297, SF1612, S1744;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
dmsD
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Atomic Structure Of A Putative Anaerobic Dehydrogenase Component
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Twin-arginine leader-binding protein dmsD
|
|
PSI-BLAST
|
Twin-arginine leader-binding protein dmsD
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
putative oxidoreductase component [Escherichia coli O157:H7 str. Sakai]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
|
| Sequences |
Amino acid
FASTA format
|
0001 MTHFSQQDNF SVAARVLGAL FYYAPESAEA APLVAVLTSD GWETQWPLPE ASLAPLVTAF QTQCEETHAQ
0071 AWQRLFVGPW ALPSPPWGSV WLDRESVLFG DSTLALRQWM REKGIQFEMK QNEPEDHFGS LLLMAAWLAE
0141 NGRQTECEEL LAWHLFPWST RFLDVFIEKA EHPFYRALGE LARLTLAQWQ SQLLIPVAVK PLFR
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 CGGGCGTGTG CTCTTTTATG GCCTGCACAT
-070 GACAGTAGGA ATGGCTATTG CAGGTTAACA AATTGGTGCG GGGCAACCCG CACATTTCAG GATGTTAGGA
0001 atgacccatt tttcacagca agataatttt tctgtcgcgg cgcgcgtgtt gggcgcgctg ttttattacg
0071 ctccagagag tgcggaagcc gcacctctgg ttgcggtact caccagtgac ggctgggaaa ctcagtggcc
0141 tctaccagaa gcgtcattag cgccgctggt gacggctttt cagacacagt gtgaagagac tcacgcccag
0211 gcctggcagc gtttgtttgt cggcccgtgg gcactgccgt ctccgccgtg ggggtcggtc tggctggatc
0281 gcgaatctgt gctgtttggc gattcaacat tggcacttcg tcagtggatg cgcgagaaag gcattcagtt
0351 tgaaatgaag caaaacgaac cggaagatca ttttggttca ctgctgttga tggctgcgtg gttggcggag
0421 aatggtcgcc agacagaatg cgaagaattg ctggcatggc acctttttcc gtggtcaaca cgttttcttg
0491 atgtttttat cgaaaaagca gaacaccctt tctaccgtgc actgggtgaa ctggctcgct taacgctggc
0561 gcaatggcaa tcacaactgt taattcctgt cgcggttaaa ccgctgtttc gatagGATCA CCGTAATATT
0631 GCCGGATGGT GACGATTACG CGCAATCCGG CAATAATAGG TTACAGTGTC ACGTTTTTTT ATCTCTTAAA
0701 GCACGCACTG CTTTT
|
