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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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|
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Deletion
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OCR29
(D)
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|
Related gene (W3110 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
araA
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Related strains
|
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Strains Search
|
Search strains by gene name:
araA
Search strains by all related name:
araA b0062 ECK0063 JW0061
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General information (Go to Linear View: )
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Gene Name
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araA
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Alternative name
|
b0062,ECK0063,JW0061
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Location, Length
|
66,835 - 68,337
(
-
)
;
1.44
min
;
1503
(bp) ,
500
(aa)
|
|
Product
|
L-arabinose isomerase
|
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Operon Name
|
araBAD
|
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Note
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GO_component: GO:0005737 - cytoplasm; GO_process: GO:0016052 - carbohydrate catabolic process
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Function
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enzyme; Degradation of small molecules: Carbon compounds
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Gene Ontology
|
GO:0005975
;
carbohydrate metabolic process ( araA )
GO:0008152
;
metabolic process ( araA )
GO:0008733
;
L-arabinose isomerase activity ( araA )
GO:0016853
;
isomerase activity ( araA )
GO:0019568
;
arabinose catabolic process ( araA )
GO:0030145
;
manganese ion binding ( araA )
GO:0046872
;
metal ion binding ( araA )
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PID
|
1786248
|
EC number
(KEGG Pathway)
|
5.3.1.4
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SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
ARAA_ECOLI
(
P08202
;
P78040
)
|
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- Protein name
|
L-arabinose isomerase
|
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- Synonyms
|
EC 5.3.1.4
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- Gene name
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Name=araA; OrderedLocusNames=b0062;
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Homology Analysis
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BLAST
|
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Bacteria
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GTOP
|
araA
(
homologous genes of other bacterias
)
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PDB
(database updated :
2007.02.20
)
|
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PSI-BLAST
|
Chain A, Crystal Structure Of L-Arabinose Isomerase From E.Coli
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SWISS-PROT
(database updated :
2007.02.20
)
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BLAST
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L-arabinose isomerase
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PSI-BLAST
|
L-arabinose isomerase
|
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nr
(database updated :
2007.02.20
)
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BLAST
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L-arabinose isomerase [Escherichia coli K12]
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
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PROSITE
|
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PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
AMIDATION
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MMBR References
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Gene. 1986;47(2-3):231-44.
The organization of the araBAD operon of Escherichia coli.
Lee N, Gielow W, Martin R, Hamilton E, Fowler A.
(
3549454
)
|
| Sequences |
Amino acid
FASTA format
|
0001 MTIFDNYEVW FVIGSQHLYG PETLRQVTQH AEHVVNALNT EAKLPCKLVL KPLGTTPDEI TAICRDANYD
0071 DRCAGLVVWL HTFSPAKMWI NGLTMLNKPL LQFHTQFNAA LPWDSIDMDF MNLNQTAHGG REFGFIGARM
0141 RQQHAVVTGH WQDKQAHERI GSWMRQAVSK QDTRHLKVCR FGDNMREVAV TDGDKVAAQI KFGFSVNTWA
0211 VGDLVQVVNS ISDGDVNALV DEYESCYTMT PATQIHGKKR QNVLEAARIE LGMKRFLEQG GFHAFTTTFE
0281 DLHGLKQLPG LAVQRLMQQG YGFAGEGDWK TAALLRIMKV MSTGLQGGTS FMEDYTYHFE KGNDLVLGSH
0351 MLEVCPSIAA EEKPILDVQH LGIGGKDDPA RLIFNTQTGP AIVASLIDLG DRYRLLVNCI DTVKTPHSLP
0421 KLPVANALWK AQPDLPTASE AWILAGGAHH TVFSHALNLN DMRQFAEMHD IEITVIDNDT RLPAFKDALR
0491 WNEVYYGFRR
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 cgctatcagc aatgggcgat gagcgccgaa
-070 caacactatc ttccaacttc cgccccggca caggctgccc aggccgttgc gactctataa ggacacgata
0001 atgacgattt ttgataatta tgaagtgtgg tttgtcattg gcagccagca tctgtatggc ccggaaaccc
0071 tgcgtcaggt cacccaacat gccgagcacg tcgttaatgc gctgaatacg gaagcgaaac tgccctgcaa
0141 actggtgttg aaaccgctgg gcaccacgcc ggatgaaatc accgctattt gccgcgacgc gaattacgac
0211 gatcgttgcg ctggtctggt ggtgtggctg cacaccttct ccccggccaa aatgtggatc aacggcctga
0281 ccatgctcaa caaaccgttg ctgcaattcc acacccagtt caacgcggcg ctgccgtggg acagtatcga
0351 tatggacttt atgaacctga accagactgc acatggcggt cgcgagttcg gcttcattgg cgcgcgtatg
0421 cgtcagcaac atgccgtggt taccggtcac tggcaggata aacaagccca tgagcgtatc ggctcctgga
0491 tgcgtcaggc ggtctctaaa caggataccc gtcatctgaa agtctgccga tttggcgata acatgcgtga
0561 agtggcggtc accgatggcg ataaagttgc cgcacagatc aagttcggtt tctccgtcaa tacctgggcg
0631 gttggcgatc tggtgcaggt ggtgaactcc atcagcgacg gcgatgttaa cgcgctggtc gatgagtacg
0701 aaagctgcta caccatgacg cctgccacac aaatccacgg caaaaaacga cagaacgtgc tggaagcggc
0771 gcgtattgag ctggggatga agcgtttcct ggaacaaggt ggcttccacg cgttcaccac cacctttgaa
0841 gatttgcacg gtctgaaaca gcttcctggt ctggccgtac agcgtctgat gcagcagggt tacggctttg
0911 cgggcgaagg cgactggaaa actgccgccc tgcttcgcat catgaaggtg atgtcaaccg gtctgcaggg
0981 cggcacctcc tttatggagg actacaccta tcacttcgag aaaggtaatg acctggtgct cggctcccat
1051 atgctggaag tctgcccgtc gatcgccgca gaagagaaac cgatcctcga cgttcagcat ctcggtattg
1121 gtggtaagga cgatcctgcc cgcctgatct tcaataccca aaccggccca gcgattgtcg ccagcttgat
1191 tgatctcggc gatcgttacc gtctactggt taactgcatc gacacggtga aaacaccgca ctccctgccg
1261 aaactgccgg tggcgaatgc gctgtggaaa gcgcaaccgg atctgccaac tgcttccgaa gcgtggatcc
1331 tcgctggtgg cgcgcaccat accgtcttca gccatgcact gaacctcaac gatatgcgcc aattcgccga
1401 gatgcacgac attgaaatca cggtgattga taacgacaca cgcctgccag cgtttaaaga cgcgctgcgc
1471 tggaacgaag tgtattacgg gtttcgtcgc taagtagccg catccggtat gtaacgcctg atgcgacgct
1541 gacgcgtctt atctggccta cacgctgcga ttttgtaggc cggataagca aagcgcatcc ggc
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