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PEC Original Annotations
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Essentiality
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Class
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essential
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References (PMID)
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J Bacteriol. 1990;172(11):6316-22.
Complementation of an RNase P RNA (rnpB) gene deletion in Escherichia coli by homologous genes from distantly related eubacteria.
Waugh DS, Pace NR.
(
1699929
)
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Deletion
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OCL31
(D)
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Related gene (W3110 PEC)
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Gene Search
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Search MG1655 PEC by gene name:
rnpB
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Related strains
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Strains Search
|
Search strains by gene name:
rnpB
Search strains by all related name:
rnpB b3123 ECK3111 JWR0070
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General information (Go to Linear View: )
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misc_RNA Name
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rnpB
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Alternative name
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b3123,ECK3111,JWR0070
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Location, Length
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3,268,238 - 3,268,614
(
-
)
;
70.44
min
;
377
(bp) ,
|
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Product
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RNase P, M1 RNA component
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Operon Name
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garPLRK-rnpB
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Note
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RNase P is an essential enzyme responsible for the processing of the 5' ends of precursors to tRNA, 4.5S RNA, and other naturally occurring stable RNA molecules; RNase P also affects gene expression of polycistronic operon mRNAs
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Function
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1.2.1 metabolism; macromolecule degradation; RNA,2.2.3 information transfer; RNA related; RNA modification,enzyme; Degradation of RNA
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Gene Ontology
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PID
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EC number
(KEGG Pathway)
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Homology Analysis
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BLAST
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Bacteria
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GTOP
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PDB
(database updated :
2007.02.20
)
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PSI-BLAST
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SWISS-PROT
(database updated :
2007.02.20
)
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BLAST
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PSI-BLAST
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nr
(database updated :
2007.02.20
)
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BLAST
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
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PROSITE
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PROSITE
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MMBR References
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J Mol Biol. 1996;261(3):303-8.
Growth rate regulation of 4.5 S RNA and M1 RNA the catalytic subunit of Escherichia coli RNase P.
Dong H, Kirsebom LA, Nilsson L.
(
8780771
)
|
FEBS Lett. 1980;110(2):161-3.
A second gene which affects the RNA processing enzyme ribonuclease P of Escherichia coli.
Apirion D, Watson N.
(
6154596
)
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Cell. 1980;9:881-887.
E. coli RNAase P has a required RNA component in vivo.
Kole, R., M. F. Baer, B. C. Stark, and S. Altman.
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J Bacteriol. 1991;173(5):1813-6.
Precise mapping of the rnpB gene encoding the RNA component of RNase P in Escherichia coli K-12.
Komine Y, Inokuchi H.
(
1705543
)
|
RNA 1995;1:327-334
Processing of the precursor to the catalytic RNA subunit of RNase P from Escherichia coli.
Lundberg, U., and S. Altman.
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Proc Natl Acad Sci U S A. 1984;81:3959-3963
Tandem promoters preceding the gene for the M1 RNA component of Escherichia coli ribonuclease.
Motamedi, H., Y. Lee, and F. J. Schmidt.
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Cell. 1982;30(2):627-36.
Nucleotide sequence of the gene encoding the RNA subunit (M1 RNA) of ribonuclease P from Escherichia coli.
Reed RE, Baer MF, Guerrier-Takada C, Donis-Keller H, Altman S.
(
6183002
)
|
Proc Natl Acad Sci U S A. 1983;80:5359-5363
Repeated sequences and open reading frames in the 3' flanking region of the gene for the RNA subunit of Escherichia coli ribonuclease.
Reed, R. E., and S. Altman.
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Proc Natl Acad Sci U S A. 1983;80:6187-6191
Processing of transcription products of the gene encoding the RNA component of RNase P.
Sakamoto, H., A. Kimura, and Y. Shimura.
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| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 acaatatctg ccgtgcttca cgtaatatcg
-070 ccgcgacact ggcgattgga atgcgcaacg cggggtgaca agggcgcgca aaccctctat actgcgcgcc
0001 gaagctgacc agacagtcgc cgcttcgtcg tcgtcctctt cgggggagac gggcggaggg gaggaaagtc
0071 cgggctccat agggcagggt gccaggtaac gcctgggggg gaaacccacg accagtgcaa cagagagcaa
0141 accgccgatg gcccgcgcaa gcgggatcag gtaagggtga aagggtgcgg taagagcgca ccgcgcggct
0211 ggtaacagtc cgtggcacgg taaactccac ccggagcaag gccaaatagg ggttcataag gtacggcccg
0281 tactgaaccc gggtaggctg cttgagccag tgagcgattg ctggcctaga tgaatgactg tccacgacag
0351 aacccggctt atcggtcagt ttcacctgat ttacgtaaaa acccgcttcg gcgggttttt gcttttggag
0421 gggcagaaag atgaatgact gtccacgacg ctatacccaa aagaaagcgg cttatcg
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