|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCL05-3
(D)
,
OCL05-5
(D)
,
LD3-12-1
(LD)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
istR
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
istR
Search strains by all related name:
istR b4616 ECK4425 psr19 psrA19
|
General information (Go to Linear View: )
|
|
misc_RNA Name
|
istR
|
|
Alternative name
|
b4616,ECK4425,psr19,psrA19
|
|
Location, Length
|
3,851,141 - 3,851,280
(
-
)
;
83.00
min
;
140
(bp) ,
|
|
Product
|
sRNA antisense regulators IstR-1 and IstR-2, affectr tisB, Hfq-dependent
|
|
Operon Name
|
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 cccgcataac acattgcgta cagtgatatt
-070 atagaagttt actgtataaa taaacagtaa tatttggaca aaacgcaaac tgtgatcgat actcaactat
0001 gcactaaata cgtcaaaatt cgtgccgaaa ttgcgcgttc tgcgcggaac acgtatactt tcagtgttga
0071 cataatacag tgtgctttgc ggttaccagc cgcaggcgac tgacgaaacc tcgctccggc ggggtttttt
0141 gttatctgca attcagtaca aaacgtgatc aacccctcaa ttttcccttg ctgaaaaatt ttccattgtc
0211 tcccctgtaa agctgtgctt gtataaatat
|
