|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCL29,30-6 (AK4-11 / BK5-11)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
psrO
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
psrO
Search strains by all related name:
psrO b4449 ECK3153 JWR0253 p3 psrA15 sraG
|
General information (Go to Linear View: )
|
|
misc_RNA Name
|
psrO
|
|
Alternative name
|
b4449,ECK3153,JWR0253,p3,psrA15,sraG
|
|
Location, Length
|
3,309,247 - 3,309,420
(
+
)
;
71.32
min
;
174
(bp) ,
|
|
Product
|
novel sRNA, function unknown
|
|
Operon Name
|
psrO
|
|
Note
|
identified in a large scale screen
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GTGTGTTGGC CGTACTGGAA TTTACGAACG
-070 ATCGGATTAA GCAATGTAAT ATCCTTTCTC TTTCTTAGAC AGTACCTTAC GGCACTGGTG TTAATACCCG
0001 atcttctgcg catcctcgcg actaatgaca accctaaccc agctctatgt gggtaaagcc tctcattagc
0071 cgcgcgaacc tctgcaacgg aagatcattc atagcaacaa tacattagtt tccagtgaat tgctgccgtc
0141 agcttgaaaa aaggggccac tcaggccccc ttttCTGAAA CTCGCAAGAA TTAGCGACGC AGACCCAGGC
0211 GCTCGATGAG CTGGGTGTAA CGTGCTACGT CTTTACGTTT CAGGTAGTCG AGCAGTTTAC GACG
|
