|
PEC Original Annotations
|
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Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCL44
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
omrB
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
omrB
Search strains by all related name:
omrB b4445 ECK2834 JWR0249 PAIR2b rygB t59
|
General information (Go to Linear View: )
|
|
misc_RNA Name
|
omrB
|
|
Alternative name
|
b4445,ECK2834,JWR0249,PAIR2b,rygB,t59
|
|
Location, Length
|
2,974,326 - 2,974,407
(
-
)
;
64.11
min
;
82
(bp) ,
|
|
Product
|
sRNA antisense regulator downregulates OMproteins and curli; positively regulated by OmpR/EnvZ, Hfq-dependent
|
|
Operon Name
|
omrB
|
|
Note
|
identified in a large scale screen
|
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Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
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BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 aagacaaaaa aagagattgc aaacctttgg
-070 ttacactttg cgaaacgctg ttgcgattga ccgctggtgg cgtttggctt caggttgcta aagtggtgat
0001 cccagaggta ttgataggtg aagtcaactt cgggttgagc acatgaatta caccagcctg cgcagatgcg
0071 caggtttttt ttgccggtca tcaatctgta acagtaaccg acaatttaca cacctcgttg catttccctt
0141 cattcctttg cgttttctcg ctggcgaaga gtcgtcgtgc ag
|
