|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
LD3-18-1
(LD)
,
DE(relA-argA)216
,
OCL44,45-6
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
gcvB
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
gcvB
Search strains by all related name:
gcvB b4443 ECK2804 IS145 JWR0247 psrA11
|
General information (Go to Linear View: )
|
|
misc_RNA Name
|
gcvB
|
|
Alternative name
|
b4443,ECK2804,IS145,JWR0247,psrA11
|
|
Location, Length
|
2,940,718 - 2,940,923
(
+
)
;
63.38
min
;
206
(bp) ,
|
|
Product
|
sRNA antisense regulator represses oppA, dppA, gltI and livJ expression, Hfq-dependent
|
|
Operon Name
|
gcvB
|
|
Note
|
regulated by gcvA and gcvR
|
|
Function
|
represses oppA, dppA, gltI, and livJ expression; mechanism unknown
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TTAACAATTA GATCACACTA TGTAACCTAT
-070 TAGTTTTTTT AATCTGAGCC ATTATAAATT GTCCGTTGAG CTTCTACCAG CAAATACCTA TAGTGGCGGC
0001 acttcctgag ccggaacgaa aagttttatc ggaatgcgtg ttctggtgaa cttttggctt acggttgtga
0071 tgttgtgttg ttgtgtttgc aattggtctg cgattcagac catggtagca aagctacctt ttttcacttc
0141 ctgtacattt accctgtctg tccatagtga ttaatgtagc accgcctaat tgcggtgctt ttttttACCT
0211 TGCGATCGCG AATTACTGAT CCAGTTCGAC CATCTCTTTC ACGTCAGTAC GGTTGATCTG CTGTTTGTTG
0281 CCATTAGCGT CTTTATACGA AATCAT
|
