|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCL54
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
shoB
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
shoB
Search strains by all related name:
shoB b4607 b4681 b4687 ECK4502 ryfB yphI
|
General information (Go to Linear View: )
|
|
misc_RNA Name
|
shoB
|
|
Alternative name
|
b4607,b4681,b4687,ECK4502,ryfB,yphI
|
|
Location, Length
|
2,698,139 - 2,698,219
(
-
)
;
58.15
min
;
81
(bp) ,
|
|
Product
|
toxic membrane protein
|
|
Operon Name
|
ryfB-shoB
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
226510966
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
| Sequences |
Amino acid
FASTA format
|
0001 MTDCRYLIKR VIKIIIAVLQ LILLFL
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 tgtggagtgc agcatgcacc ctcaataact
-070 cgcacgttca gttttgggga gatgtaaggg ctaatctgaa tggctgcatt ccttgtttaa ggaaaaacga
0001 atgactgatt gccgatacct gattaaacgg gtcatcaaaa tcatcattgc tgttttacag ctgatccttc
0071 tgttcttata acacaaggaa acgtacttaa ggtgcgtccg gtgaaccagt cggacgcacc tttaataact
0141 ataaataagt gtctgggcag atactatata aattaactta g
|
