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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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Deletion
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14
(LD)
,
OCL70,72-4 (LD 14C_P/O)
(D)
,
OCL71
(D)
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Related gene (W3110 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
micF
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Related strains
|
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Strains Search
|
Search strains by gene name:
micF
Search strains by all related name:
micF b4439 ECK2208 IS113 JWR0043 stc
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General information (Go to Linear View: )
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misc_RNA Name
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micF
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Alternative name
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b4439,ECK2208,IS113,JWR0043,stc
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Location, Length
|
2,311,106 - 2,311,198
(
+
)
;
49.81
min
;
93
(bp) ,
|
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Product
|
sRNA antisense regulator affecting ompF expression, Hfq-dependent
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Operon Name
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micF
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Note
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regulatory antisense RNA affecting ompF expression; member of soxRS regulon
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Function
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Gene Ontology
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PID
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EC number
(KEGG Pathway)
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Homology Analysis
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BLAST
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Bacteria
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GTOP
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PDB
(database updated :
2007.02.20
)
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PSI-BLAST
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SWISS-PROT
(database updated :
2007.02.20
)
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BLAST
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PSI-BLAST
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nr
(database updated :
2007.02.20
)
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BLAST
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
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PROSITE
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PROSITE
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MMBR References
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Gene. 1985;40(2-3):337-42.
Molecular characterisation of the Stc- mutation of Escherichia coli K-12.
Misra R, Reeves P.
(
3007299
)
|
Proc Natl Acad Sci U S A. 1984;81:1966-1970
A unique mechanism regulating gene expression: translational inhibition by a complementary RNA transcript (micRNA).
Mizuno, T., M.-Y. Chou, and M. Inouye.
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Mol Gen Genet. 1982;187:335-341.
A new locus, stc, which affects the phenotype of tolC mutants of Escherichia coli K-12.
Morona, R., and P. R. Reeves.
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J Bacteriol. 1994;176:5005-5010
micF antisense RNA has a major role in osmoregulation of OmpF in Escherichia coli.
Ramani, N., M. Hedeshian, and M. Freundlich.
|
FEMS Microbiol Lett. 1995;133(3):209-13.
micF RNA is a substrate for RNase E.
Schmidt M, Delihas N.
(
8522136
)
|
J Bacteriol. 1996;178:3650-3653
H-NS regulates OmpF expression through micF antisense RNA in Escherichia coli.
Suzuki, T., C. Ueguchi, and T. Mizuno.
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FEMS Microbiol Lett. 1991;67(1):39-44.
Expression of micF involved in porin synthesis in Escherichia coli: two distinct cis-acting elements respectively regulate micF expression positively and negatively.
Takayanagi K, Maeda S, Mizuno T.
(
1723390
)
|
Biosci Biotechnol Biochem. 1996;60(2):309-15.
Isolation and characterization of the heat-responsive genes in Escherichia coli.
Utsumi R, Horie T, Katoh A, Kaino Y, Tanabe H, Noda M.
(
9063979
)
|
Nucleic Acids Res. 1987;15:2089-2101
The isolation and characterization of RNA coded by the micF gene in Escherichia coli.
Andersen, J., N. Delihas, K. Ikenaka, P. J. Green, O. Pines, O. Ilercil, and M. Inouye.
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| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 AGCAATAATA ATTCAAGGTT AAAATCAATA
-070 ACTTATTCTT AAGTATTTGA CAGCACTGAA TGTCAAAACA AAACCTTCAC TCGCAACTAG AATAACTCCC
0001 gctatcatca ttaactttat ttattaccgt cattcatttc tgaatgtctg tttaccccta tttcaaccgg
0071 atgcctcgca ttcggttttt tttACCCTTC TTTACACACT TTTCATTATT CTGTGCTACC ACAGAAAAAC
0141 TATAACGCTT GTTAACTATT TCACAAATAA TTAACATCCG CATAATTTCC AGC
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