|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCL87
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rprA
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rprA
Search strains by all related name:
rprA b4431 ECK1686 IS083 JWR0203 psrA5
|
General information (Go to Linear View: )
|
|
misc_RNA Name
|
rprA
|
|
Alternative name
|
b4431,ECK1686,IS083,JWR0203,psrA5
|
|
Location, Length
|
1,768,396 - 1,768,501
(
+
)
;
38.11
min
;
106
(bp) ,
|
|
Product
|
sRNA antisense activator for RpoS translation, Hfq-dependent
|
|
Operon Name
|
rprA
|
|
Note
|
RprA RNA; positive regulatory RNA for rpoS translation
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GCCATTCAGC TGGTAGTACC TGTCGCAAAT
-070 TCTTTACAGT TTTTAAACTA ATGAGACGAA TCTGATCGAC GCAAAAAGTC CGTATGCCTA CTATTAGCTC
0001 acggttataa atcaacatat tgatttataa gcatggaaat cccctgagtg aaacaacgaa ttgctgtgtg
0071 tagtctttgc ccatctccca cgatgggctt ttttttAACA TTTTTCCGCT TCGCTACCTC GCCCCTCACT
0141 CTTTCCAATA ATGTTGCACA AGATACTGTG ACTCTCTTCA AGCCGTCAGC AGGCTGATAA TGTTAT
|
