|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
20
(LD)
,
DE(PLK1608)
,
OCR70,L90-5 (LD 20-1_P/O)
(D)
,
OCR70,L90-6 (LD 20-1_P/O & 20-2TC)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
sokB
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
sokB
Search strains by all related name:
sokB b4429 ECK1414 JWR0235
|
General information (Go to Linear View: )
|
|
misc_RNA Name
|
sokB
|
|
Alternative name
|
b4429,ECK1414,JWR0235
|
|
Location, Length
|
1,490,143 - 1,490,198
(
+
)
;
32.12
min
;
56
(bp) ,
|
|
Product
|
sRNA antisense regulator blocking mokB, and hence hokB, translation
|
|
Operon Name
|
sokB
|
|
Note
|
antisense RNA blocking mokB and hokB translation
|
|
Function
|
component of addiction module
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 AGAATCGTAA TGCAGATAAT GAGCAGACAC
-070 ACCACCAGAG GGTTGTGCTT CATAGCCTTT CTCCTTGCCG GATGGCGGGT AAGAGGCTAA GATCTGAATT
0001 gctaggttca ttcgttggcc tcggttgata gaaatatcgg tcggggcctt cgtcttTCTG ATTCCCGGTT
0071 AGCCTGAAAA CAGAAAGTCT CAGGCACCCG CAGGCATCCT ATGAGGTTTC CTTAGGGACG AAAATAATCA
0141 CTTCACGAAA TTGCGT
|
