|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
20
(LD)
,
DE(PLK1608)
,
OCR70,L90-5 (LD 20-1_P/O)
(D)
,
OCR70,L90-6 (LD 20-1_P/O & 20-2TC)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
micC
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
micC
Search strains by all related name:
micC b4427 ECK1373 IS063 JWR0234 tke8
|
General information (Go to Linear View: )
|
|
misc_RNA Name
|
micC
|
|
Alternative name
|
b4427,ECK1373,IS063,JWR0234,tke8
|
|
Location, Length
|
1,435,145 - 1,435,253
(
+
)
;
30.93
min
;
109
(bp) ,
|
|
Product
|
sRNA antisense regulator of OmpC translation, Hfq-dependent
|
|
Operon Name
|
micC
|
|
Note
|
regulatory antisense RNA affecting ompC expression
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TAATTCCTCT GAAATGATAA TAAGTCTGGT
-070 GAATGTATCG AAGATAATAC ATACAAAATA AAAATTATAC TTTTAATTTG CTATACGTTA TTCTGCGCGG
0001 gttatatgcc tttattgtca cagattttat tttctgttgg gccattgcat tgccactgat tttccaacat
0071 ataaaaagac aagcccgaac agtcgtccgg gctttttttT TAGAATTGGA TAATCCTTAT CCAGAGCATT
0141 TAATCGGTGT TGCTTTTTTC CGCTTTTCCG GCCATTTGTG CCAGGAAGTC ATAGCGTTTT TGCAAATCA
|
