|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Deletion
|
OCR67
(D)
,
OCR67-3
(D)
,
OCR67-5
(D)
,
OCR68
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rttR
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rttR
Search strains by all related name:
rttR b1229 b4425 ECK1223 JWR0232 rtT rtV1 tpr
|
General information (Go to Linear View: )
|
|
misc_RNA Name
|
rttR
|
|
Alternative name
|
b1229,b4425,ECK1223,JWR0232,rtT,rtV1,tpr
|
|
Location, Length
|
1,286,289 - 1,286,459
(
-
)
;
27.72
min
;
171
(bp) ,
|
|
Product
|
rtT sRNA, processed from tyrT transcript
|
|
Operon Name
|
rttR
|
|
Note
|
rtT RNA may modulate the stringent response; released from primary tyrT transcript during tRNA processing; encodes putative Tpr protein
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
tpr
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
|
|
MMBR References
|
Cell. 1981;26(3 Pt 1):299-304.
An E. coli gene coding for a protamine-like protein.
Altman S, Model P, Dixon GH, Wosnick NA.
(
7034959
)
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ttacccctgg tggggttccc gagcggccaa
-070 agggagcaga ctgtaaatct gccgtcatcg acttcgaagg ttcgaatcct tcccccacca ccatcacttt
0001 caaaagtccc tgaacttccc aacgaatccg caattaaata ttctgcccat gcggggaagg atgagaagct
0071 tcgaccaagg ttcgactcga gcgccagcga gagagcgttg ccgcaggcaa cgacccgaag ggcgaagcgc
0141 gcagcgctga gtaatccttc ccccaccacc atcactttca aaagtccctg aactctcaag cgaatccgca
0211 atcaaatatt ctgcccatgc ggggaaggat gagaagcttc gactaaggtt cggctcgagc g
|
