|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCR67
(D)
,
OCR67-2
(D)
,
OCR67-5
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rdlA
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rdlA
Search strains by all related name:
rdlA b4420 ECK1205 JWR0229
|
General information (Go to Linear View: )
|
|
misc_RNA Name
|
rdlA
|
|
Alternative name
|
b4420,ECK1205,JWR0229
|
|
Location, Length
|
1,268,546 - 1,268,612
(
+
)
;
27.34
min
;
67
(bp) ,
|
|
Product
|
sRNA antisense regulator affects LdrA translation; proposed addiction module in LDR-A repeat, with toxic peptide LdrA
|
|
Operon Name
|
rdlA
|
|
Note
|
antisense RNA, trans-acting regulator of ldrA translation
|
|
Function
|
component of addiction module
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ATCGGTGCTG CCAGGTCGTG CCAGAAAATC
-070 ATGGCAAACT GCGCGAGCGT CATATAGCCG CCTTGTTGTA ATGACAACAT TTTGCGGCTA TTCTTGAATT
0001 gttctggttc aagattagcc cccgttctgt tgtcaggttg tacctctcaa cgtgcggggg ttttctcTTT
0071 CCAGCAACCA ATGCCACCAG GGATAAAGCC CCCGCAACAT TGCGCCTCAC CGGATAACGC CGGCTTGGTG
0141 TGGATACTAC GACTCAATTC ATCTTCA
|
