|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCR61
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
psrD
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
psrD
Search strains by all related name:
psrD b4418 ECK1073 JWR0228 pke20 psrA4 sraB
|
General information (Go to Linear View: )
|
|
misc_RNA Name
|
psrD
|
|
Alternative name
|
b4418,ECK1073,JWR0228,pke20,psrA4,sraB
|
|
Location, Length
|
1,145,812 - 1,145,980
(
+
)
;
24.70
min
;
169
(bp) ,
|
|
Product
|
novel Novel sRNA, function unknown
|
|
Operon Name
|
psrD
|
|
Note
|
identified in a large scale screen
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 CGTGGGGTTT CGTCGACCTC TGGTGCTGCA
-070 CATTCAAAAG AGATTTGCAG TTTTTCCAGA AGAGCGCGAC GCCATGGCGA GGTGGAGGCT AAAATAAGTT
0001 taggcatatt tttttccatc agatatagcg tattgatgat agccatttta aactatgcgc ttcgttttgc
0071 aggttgatgt ttgttatcag cactgaacga aaataaagca gtaacccgca atgtgtgcga attattggca
0141 aaaggcaacc acaggctgcc tttttctttG ACTCTATGAC GTTACAAAGT TAATATGCGC GCCCTATGCA
0211 AAAGGTAAAA TTACCCCTGA CTCTCGATCC GGTTCGTACG GCTCAAAAAC GCCTTGATT
|
