|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
28
(LD)
,
OCR42
(D)
,
OCR42,43-3 (LD 28B_CRS)
(D)
,
OCR42,43-4 (LD 28B_P/O)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
chiX
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
chiX
Search strains by all related name:
chiX b4585 ECK4396 er13 micM rybC sroB
|
General information (Go to Linear View: )
|
|
misc_RNA Name
|
chiX
|
|
Alternative name
|
b4585,ECK4396,er13,micM,rybC,sroB
|
|
Location, Length
|
506,428 - 506,511
(
+
)
;
10.92
min
;
84
(bp) ,
|
|
Product
|
sRNA antisense regulator of OM chitoporin ChiP(YbfM), Hfq-dependent
|
|
Operon Name
|
|
|
Note
|
|
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Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 AAAAAAACGA AGCAAGCATA CGCCTGATGG
-070 CGGTCCAAAA AAAAGAGTCA TCTTGCCTAA GAGTATTGGC AGGATGGTGA GATTGAGCGA CAATCGAGTT
0001 acaccgtcgc ttaaagtgac ggcataataa taaaaaaatg aaattcctct ttgacgggcc aatagcgata
0071 ttggccattt ttttAGCGCA ACATTTGCGG CAAATTCCCT TCTCCATACA GGTGTAGTGC ACCGACCGCG
0141 ACCACATATC GCCCCGGCGG CATGGCGCGT AATTTATCCC GCCA
|
