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PEC Original Annotations
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Essentiality
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Class
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essential
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References (PMID)
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J Mol Biol. 1984;178(3):533-50.
The 4.5 S RNA gene of Escherichia coli is essential for cell growth.
Brown S, Fournier MJ.
(
6208371
)
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Deletion
|
OCR41
(D)
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Related gene (W3110 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
ffs
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Related strains
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Strains Search
|
Search strains by gene name:
ffs
Search strains by all related name:
ffs b0455 ECK0449 JWR0009
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General information (Go to Linear View: )
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misc_RNA Name
|
ffs
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Alternative name
|
b0455,ECK0449,JWR0009
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Location, Length
|
475,672 - 475,785
(
+
)
;
10.25
min
;
114
(bp) ,
|
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Product
|
4.5S sRNA component of Signal Recognition Particle (SRP)
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Operon Name
|
ffs
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Note
|
4.5S RNA; component of ribonucleoprotein particle; works with the Ffh protein; adjusted endpoints to reflect the mature 4.5S RNA (114 nt)
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Function
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2.2.6 information transfer; RNA related; rRNA, stable RNA,2.3.2 information transfer; protein related; translation,7.1 location of gene products; cytoplasm,component of Signal Recognition Particle (SRP) with the Ffh protein; involved in co-translational t
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Gene Ontology
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PID
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EC number
(KEGG Pathway)
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Homology Analysis
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BLAST
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Bacteria
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GTOP
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PDB
(database updated :
2007.02.20
)
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PSI-BLAST
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SWISS-PROT
(database updated :
2007.02.20
)
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BLAST
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PSI-BLAST
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nr
(database updated :
2007.02.20
)
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BLAST
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
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PROSITE
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PROSITE
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| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TCGCATTGCG CAAGAAACCA GCATCTGGCA
-070 CGCGATGGGT TGCAATTAGC CGGGGCAGCA GTGATAATGC GCCTGCGCGT TGGTTCTCAA CGCTCTCAAT
0001 gggggctctg ttggttctcc cgcaacgcta ctctgtttac caggtcaggt ccggaaggaa gcagccaagg
0071 cagatgacgc gtgtgccggg atgtagctgg cagggccccc acccATTTCT GCCTCCCACC GTTTCGTCAA
0141 AAAATCCCAA CATGGCTAAA CTTTAACCAC AACTGACGTC GCAAGAATTG TCTGGCTGCG CAGTACGCTT
0211 CGGA
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