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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
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|
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Deletion
|
OCR15
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
pheU
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|
Related strains
|
|
Strains Search
|
Search strains by gene name:
pheU
Search strains by all related name:
pheU b4134 ECK4128 JWR0111 pheR pheW
|
General information (Go to Linear View: )
|
|
tRNA Name
|
pheU
|
|
Alternative name
|
b4134,ECK4128,JWR0111,pheR,pheW
|
|
Location, Length
|
4,360,574 - 4,360,649
(
-
)
;
93.98
min
;
76
(bp) ,
|
|
Product
|
tRNA-Phe
|
|
Operon Name
|
pheU
|
|
Note
|
anticodon: GAA
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Function
|
|
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Gene Ontology
|
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PID
|
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EC number
(KEGG Pathway)
|
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Homology Analysis
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BLAST
|
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Bacteria
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GTOP
|
|
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PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
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Pfam
|
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PROSITE
|
|
PROSITE
|
|
|
MMBR References
|
J Bacteriol. 1984;158(2):762-3.
Genetic mapping of pheU, an Escherichia coli gene for phenylalanine tRNA.
Gallagher PJ, Schwartz I, Elseviers D.
(
6373735
)
|
J Biol Chem. 1990;265:21527-21531
The pheR gene of Escherichia coli encodes tRNA(Phe), not a repressor protein.
Gavini, N., and B. E. Davidson.
|
J Biol Chem. 1991;266:7750-7753
Regulation of pheA expression by the pheR product in Escherichia coli is mediated through attenuation of transcription.
Gavini, N., and B. E. Davidson.
|
J Mol Biol. 1990;212(4):579-98.
Genomic organization and physical mapping of the transfer RNA genes in Escherichia coli K12.
Komine Y, Adachi T, Inokuchi H, Ozeki H.
(
2184240
)
|
J Bacteriol. 1990;172(10):6077-83.
Evidence that there are only two tRNA(Phe) genes in Escherichia coli.
Pittard J, Praszkier J, Certoma A, Eggertsson G, Gowrishankar J, Narasaiah G, Whipp MJ.
(
2211525
)
|
Nucleic Acids Res. 1983;11:4379-4389
Molecular cloning and sequencing of pheU, a gene for Escherichia coli tRNAPhe.
Schwartz, I., R. A. Klotsky, D. Elseviers, P. Gallagher, M. Krauskopf, M. A. Q. Siddiqui, J. F. H. Wong, and B. A. Roe.
|
Nucleic Acids Res. 1986;14(14):5937
Nucleotide sequence of pheW; a third gene for E. coli tRNAPhe.
Wilson RK, Brown T, Roe BA.
(
3526288
)
|
FEBS Lett. 1991;292(1-2):45-7.
Precise physical mapping of the Escherichia coli pheU transcription unit.
Caillet J, Pages D.
(
1959625
)
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 cacagaaaag aagcgatttg ccgcaatctt
-070 aagcagttga atcgctttta ctgaaattag gttgacgaga tgtgcagatt acggtttaat gcgccccgtt
0001 gcccggatag ctcagtcggt agagcagggg attgaaaatc cccgtgtcct tggttcgatt ccgagtccgg
0071 gcaccaaatt catataaacg gacctccacg gaggtccgtt tttcgtttca ggacgccacg atttaagcgt
0141 tctgcctcca aatcaattct accgaactca accaga
|
