|
PEC Original Annotations
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|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Deletion
|
OCR10,11-11 (AK1-16 / BK2-16)
(D)
,
OCR10,11-16 (BK5-16 / AK7-16)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
tyrU
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
tyrU
Search strains by all related name:
tyrU b3977 ECK3968 JWR0213 supM supZ
|
General information (Go to Linear View: )
|
|
tRNA Name
|
tyrU
|
|
Alternative name
|
b3977,ECK3968,JWR0213,supM,supZ
|
|
Location, Length
|
4,173,495 - 4,173,579
(
+
)
;
89.95
min
;
85
(bp) ,
|
|
Product
|
tRNA-Tyr
|
|
Operon Name
|
thrU-tyrU-glyT-thrT-tufB
|
|
Note
|
anticodon: GUA
|
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Function
|
|
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Gene Ontology
|
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PID
|
|
EC number
(KEGG Pathway)
|
|
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Homology Analysis
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BLAST
|
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Bacteria
|
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GTOP
|
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PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
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Pfam
|
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PROSITE
|
|
PROSITE
|
|
|
MMBR References
|
Microbiol. Rev. 1988;52:354-374.
Transfer ribonucleic acid-mediated suppression of termination codons in Escherichia coli.
Eggertsson, G., and D. Soll.
|
Nature. 1981;294(5840):422-7.
Dual function transcripts specifying tRNA and mRNA.
Hudson L, Rossi J, Landy A.
(
7312036
)
|
J Mol Biol. 1990;212(4):579-98.
Genomic organization and physical mapping of the transfer RNA genes in Escherichia coli K12.
Komine Y, Adachi T, Inokuchi H, Ozeki H.
(
2184240
)
|
Cell. 1981;25(1):251-8.
Location of the tufB promoter of E. coli: cotranscription of tufB with four transfer RNA genes.
Lee JS, An G, Friesen JD, Fill NP.
(
6168388
)
|
Cell. 1979;16(3):523-34.
Structure and organization of the two tRNATyr gene clusters on the E. coli chromosome.
Rossi JJ, Landy A.
(
378394
)
|
Gene. 1980;12(1-2):33-9.
The nucleotide sequence of tufB and four nearby tRNA structural genes of Escherichia coli.
An G, Friesen JD.
(
7011904
)
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ATGCGCGCTA CTTGATGCCG ACTTAGCTCA
-070 GTAGGTAGAG CAACTGACTT GTAATCAGTA GGTCACCAGT TCGATTCCGG TAGTCGGCAC CATCAAGTCC
0001 ggtggggttc ccgagcggcc aaagggagca gactgtaaat ctgccgtcac agacttcgaa ggttcgaatc
0071 cttcccccac caccaATTTC GGCCACGCGA TGGCGTAGCC CGAGACGATA AGTTCGCTTA CCGGCTCGAA
0141 TAAAGAGAGC TTCTCTCGAT ATTCAGTGCA GAATGAAAAT CAGGT
|
