|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
essential
|
|
References (PMID)
|
|
|
Deletion
|
OCR01,2-3 (AK4-14 / BK5-14)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
trpT
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
trpT
Search strains by all related name:
trpT b3761 ECK3755 JWR0087 su7 su8 su9 supU supV
|
General information (Go to Linear View: )
|
|
tRNA Name
|
trpT
|
|
Alternative name
|
b3761,ECK3755,JWR0087,su7,su8,su9,supU,supV
|
|
Location, Length
|
3,944,980 - 3,945,055
(
+
)
;
85.03
min
;
76
(bp) ,
|
|
Product
|
tRNA-Trp
|
|
Operon Name
|
trpT
|
|
Note
|
anticodon: CCA
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
|
MMBR References
|
Microbiol. Rev. 1988;52:354-374.
Transfer ribonucleic acid-mediated suppression of termination codons in Escherichia coli.
Eggertsson, G., and D. Soll.
|
J Mol Biol. 1990;212(4):579-98.
Genomic organization and physical mapping of the transfer RNA genes in Escherichia coli K12.
Komine Y, Adachi T, Inokuchi H, Ozeki H.
(
2184240
)
|
In D. Soll, J. Abelson, and P. Schimmel (ed.),Transfer RNA: biological aspects. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y. 1980:341-362
Genetics of nonsense suppressor tRNAs in Escherichia coli.
Ozeki, H., H. Inokuchi, F. Yamao, M. Kodaira, H. Sakano, T. Ikemura, and Y. Shimura.
|
J Biol Chem. 1979;254:12725-12731
Transcription termination in the Escherichia coli ribosomal RNA operon rrnC.
Young, R. A.
|
Science. 1992;257(5071):771-8.
Analysis of the Escherichia coli genome: DNA sequence of the region from 84.5 to 86.5 minutes.
Daniels DL, Plunkett G 3rd, Burland VD, Blattner FR.
(
1379743
)
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GTAAAAGAAT TCGGTGGAGC GGTAGTTCAG
-070 TCGGTTAGAA TACCTGCCTG TCACGCAGGG GGTCGCGGGT TCGAGTCCCG TCCGTTCCGC CACCCTAATT
0001 aggggcgtag ttcaattggt agagcaccgg tctccaaaac cgggtgttgg gagttcgagt ctctccgccc
0071 ctgccaGAAA TCATCCTTAG CGAAAGCTAA GGATTTTTTT TATCTGAAAT AACCCTCTCC GAAGTAAATC
0141 CTTCTACCGG CATCCTTGCC AGCCATTCAT ATTAAT
|
