MG1655
W3110
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tRNA Report : glyU
PEC Original Annotations
Essentiality
     Class non-essential
     References (PMID)
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
     Deletion ppdel-5 (LD)  ,  OCL43 (D)  
Related gene (W3110 PEC)
     Gene Search Search MG1655 PEC by gene name:  glyU
Related strains
     Strains Search Search strains by gene name:  glyU   Search strains by all related name:  glyU b2864 ECK2860 JWR0066 suA36 sufD sumB supT

General information  (Go to Linear View:)
 tRNA Name glyU  
 Alternative name b2864,ECK2860,JWR0066,suA36,sufD,sumB,supT  
 Location, Length 2,997,006 - 2,997,079 (  -  ) ;   64.60 min ; 74 (bp) , Go to Linear View
 Product tRNA-Gly  
 Operon Name glyU  
 Note anticodon: CCC  
 Function  
 Gene Ontology GO:0005515 ; protein binding ( sufD )
GO:0016226 ; iron-sulfur cluster assembly ( sufD )
 PID  
 EC number
  (KEGG Pathway)
 
 

 Linear View (Whole Mode)
View Location
   2985.0  –  3010.0 (KBP)

Homology Analysis
BLAST
    Bacteria
         GTOP sufD (  homologous genes of other bacterias  )  
    PDB     (database updated : 2007.02.20 )
        PSI-BLAST  
    SWISS-PROT     (database updated : 2007.02.20 )
        BLAST  
        PSI-BLAST
    nr     (database updated : 2007.02.20 )
        BLAST  
Pfam 28.0   (database updated : 2015-05 )
    Pfam
PROSITE
    PROSITE  

Other Cross-Reference
    EcoCyc glyU 

MMBR References
Microbiol. Rev. 1988;52:354-374.
Transfer ribonucleic acid-mediated suppression of termination codons in Escherichia coli.
Eggertsson, G., and D. Soll.
J Mol Biol. 1990;212(4):579-98.
Genomic organization and physical mapping of the transfer RNA genes in Escherichia coli K12.
Komine Y, Adachi T, Inokuchi H, Ozeki H. ( 2184240 )

Sequences
Nucleotide
FASTA format

View sequence out neighbor 100bp
-100                                             gggcagcaag ccaaaatgct gatggcgaat 
-070 taatcagcag tcagcagcgt ggcacttgct aaggagagcg taaggtttat aatgccttac gcatctcgaa 
0001 gcgggcgtag ttcaatggta gaacgagagc ttcccaagct ctatacgagg gttcgattcc cttcgcccgc 
0071 tccaatttat cttcgccgta atacttcccc attttgttgt aaataaaaag cgtttacgca atgcaatcct 
0141 tttgtaacaa cccaggtaaa acaccttatt ttca