|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Deletion
|
DE(gpt-lac)5
,
OCR36,37-1
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
thrW
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
thrW
Search strains by all related name:
thrW b0244 ECK0245 JWR0008
|
General information (Go to Linear View: )
|
|
tRNA Name
|
thrW
|
|
Alternative name
|
b0244,ECK0245,JWR0008
|
|
Location, Length
|
262,095 - 262,170
(
+
)
;
5.65
min
;
76
(bp) ,
|
|
Product
|
tRNA-Thr
|
|
Operon Name
|
thrW
|
|
Note
|
anticodon: CGU
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
|
MMBR References
|
J Mol Biol. 1990;212(4):579-98.
Genomic organization and physical mapping of the transfer RNA genes in Escherichia coli K12.
Komine Y, Adachi T, Inokuchi H, Ozeki H.
(
2184240
)
|
Mol Gen Genet. 1982;187(1):132-7.
Threonine tRNAs and their genes in Escherichia coli.
Comer MM.
(
6761541
)
|
Biochem Int. 1986;13(4):547-53.
Genes encoding threonine tRNAs with the anticodon CGU from Escherichia coli and Pseudomonas aeruginosa.
Dalrymple B, Mattick JS.
(
3099795
)
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TGCAAAAGTA GCCATTTGAT TCACAAGGCC
-070 ATTGACGCAT CGCCCGGTTA GTTTTAACCT TGTCCACCGT GATTCACGTT CGTGAACATG TCCTTTCAGG
0001 gccgatatag ctcagttggt agagcagcgc attcgtaatg cgaaggtcgt aggttcgact cctattatcg
0071 gcaccaTTAA AATCAAATTG TTACGTAAGA TCTTATCATT CTCCCACCAA AAAATTATCT TAATGTAACA
0141 GCTGGTGTAA GTAAATTCTA TCAACGAAGA TCAATC
|
