|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Microbiol Mol Biol Rev. 1998;62(3):814-984
Linkage map of Escherichia coli K-12, edition 10: the traditional map.
Berlyn MK.
(
9729611
)
|
|
|
Deletion
|
OCR36
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
aspV
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
aspV
Search strains by all related name:
aspV b0216 ECK0216 JWR0007
|
General information (Go to Linear View: )
|
|
tRNA Name
|
aspV
|
|
Alternative name
|
b0216,ECK0216,JWR0007
|
|
Location, Length
|
236,931 - 237,007
(
+
)
;
5.11
min
;
77
(bp) ,
|
|
Product
|
tRNA-Asp
|
|
Operon Name
|
aspV
|
|
Note
|
anticodon: GUC
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
|
MMBR References
|
Mol Gen Genet. 1987;206(2):356-7.
A newly discovered tRNA(1Asp) gene (aspV) of Escherichia coli K12.
Horiuchi T, Nagasawa T, Takano K, Sekiguchi M.
(
3295485
)
|
J Mol Biol. 1990;212(4):579-98.
Genomic organization and physical mapping of the transfer RNA genes in Escherichia coli K12.
Komine Y, Adachi T, Inokuchi H, Ozeki H.
(
2184240
)
|
RNA 1996;2:919-927
Selection of tRNA(Asp) amber suppressor mutants having alanine, arginine, glutamine, and lysine identity.
Martin, F., J. Reinbolt, G. Dirheimer, J. Gangloff, and G. Eriani.
|
In D. Soll, J. Abelson, and P. Schimmel (ed.),Transfer RNA: biological aspects. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y. 1980:341-362
Genetics of nonsense suppressor tRNAs in Escherichia coli.
Ozeki, H., H. Inokuchi, F. Yamao, M. Kodaira, H. Sakano, T. Ikemura, and Y. Shimura.
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GGGCGATTTT TGCAGCAAAC GATTCAAAAG
-070 ATGAGAAAAA CCGTTGACGA AGGTCGAGGC AATCCGTAAT ATTCGCCTCG TTCCCAACGG AACACAACGC
0001 ggagcggtag ttcagtcggt tagaatacct gcctgtcacg cagggggtcg cgggttcgag tcccgtccgt
0071 tccgccaCTA TTCACTCATG AAAATGAGTT CAGAGAGCCG CAAGATTTTT AATTTTGCGG TTTTTTTGTA
0141 TTTGAATTCC ACCATTTCTC TGTTCAATGA TTTTACT
|
