|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Microbiol Mol Biol Rev. 1998;62(3):814-984
Linkage map of Escherichia coli K-12, edition 10: the traditional map.
Berlyn MK.
(
9729611
)
|
|
|
Deletion
|
OCL61
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
valU
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
valU
Search strains by all related name:
valU b2401 ECK2395 JWR0047 valUalpha
|
General information (Go to Linear View: )
|
|
tRNA Name
|
valU
|
|
Alternative name
|
b2401,ECK2395,JWR0047,valUalpha
|
|
Location, Length
|
2,518,953 - 2,519,028
(
+
)
;
54.29
min
;
76
(bp) ,
|
|
Product
|
tRNA-Val
|
|
Operon Name
|
valUXY-lysV
|
|
Note
|
anticodon: UAC
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
|
MMBR References
|
J Mol Biol. 1990;212(4):579-98.
Genomic organization and physical mapping of the transfer RNA genes in Escherichia coli K12.
Komine Y, Adachi T, Inokuchi H, Ozeki H.
(
2184240
)
|
Nucleic Acids Res. 1990;18(3):672
Sequence of E.coli K12 valU operon which contains 3 genes for tRNA(Val1) and 1 gene for tRNA(Lys).
O'Connor M, Gesteland RF, Atkins JF.
(
2408024
)
|
J Bacteriol. 1990;172(9):4746-7.
Locations of genes in the 52-minute region on the physical map of Escherichia coli K-12.
Brun YV, Lapointe J.
(
2203727
)
|
J Mol Biol. 1990;214(4):825-43.
Precise mapping and comparison of two evolutionarily related regions of the Escherichia coli K-12 chromosome. Evolution of valU and lysT from an ancestral tRNA operon.
Brun YV, Breton R, Lanouette P, Lapointe J.
(
2201776
)
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TTGCGATCAT CTTGCTTAAA TTTACGACGA
-070 ACGAACAATT TCTTTAGAAA ATGCGTTGAC TCATTTTGAA CTCTCCCTAT AATGCGACTC CACACAGCGG
0001 gggtgattag ctcagctggg agagcacctc ccttacaagg agggggtcgg cggttcgatc ccgtcatcac
0071 ccaccaACTA CTTTATGTAG TCTCCGCCGT GTAGCAAGAA ATTGAGAAGT GGGTGATTAG CTCAGCTGGG
0141 AGAGCACCTC CCTTACAAGG AGGGGGTCGG CGGTTC
|
