|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Microbiol Mol Biol Rev. 1998;62(3):814-984
Linkage map of Escherichia coli K-12, edition 10: the traditional map.
Berlyn MK.
(
9729611
)
|
|
|
Deletion
|
OCL61
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
alaW
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
alaW
Search strains by all related name:
alaW alaWalpha b2397 ECK2391 JWR0045
|
General information (Go to Linear View: )
|
|
tRNA Name
|
alaW
|
|
Alternative name
|
alaWalpha,b2397,ECK2391,JWR0045
|
|
Location, Length
|
2,516,178 - 2,516,253
(
-
)
;
54.23
min
;
76
(bp) ,
|
|
Product
|
tRNA-Ala
|
|
Operon Name
|
alaWX
|
|
Note
|
anticodon: GGC
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
|
MMBR References
|
J Mol Biol. 1990;214(4):825-43.
Precise mapping and comparison of two evolutionarily related regions of the Escherichia coli K-12 chromosome. Evolution of valU and lysT from an ancestral tRNA operon.
Brun YV, Breton R, Lanouette P, Lapointe J.
(
2201776
)
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 gatttttcag cgattgaaac tacacgttgc
-070 aatttgccgt tgacacattc gggcggaatt catatgatgc cgcccgtcaa ctcgacaagc tttacgtgac
0001 ggggctatag ctcagctggg agagcgcttg catggcatgc aagaggtcag cggttcgatc ccgcttagct
0071 ccaccaaatt ttgcacccag caaacttggt acgtaaacgc atcgtggggc tatagctcag ctgggagagc
0141 gcttgcatgg catgcaagag gtcagcggtt cgatcc
|
