MG1655
W3110
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tRNA Report : serU
PEC Original Annotations
Essentiality
     Class non-essential
     References (PMID)
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
     Deletion LD3-5-1 (LD)  ,  OCL76 (D)  
Related gene (W3110 PEC)
     Gene Search Search MG1655 PEC by gene name:  serU
Related strains
     Strains Search Search strains by gene name:  serU   Search strains by all related name:  serU b1975 ECK1971 ftsM JWR0037 Su-1 su1 supD supH

General information  (Go to Linear View:)
 tRNA Name serU  
 Alternative name b1975,ECK1971,ftsM,JWR0037,Su-1,su1,supD,supH  
 Location, Length 2,041,492 - 2,041,581 (  -  ) ;   44.00 min ; 90 (bp) , Go to Linear View
 Product tRNA-Ser  
 Operon Name serU  
 Note anticodon: CGA  
 Function  
 Gene Ontology GO:0000287 ; magnesium ion binding ( supH )
GO:0003824 ; catalytic activity ( supH )
GO:0008152 ; metabolic process ( supH )
GO:0016787 ; hydrolase activity ( supH )
GO:0046872 ; metal ion binding ( supH )
GO:0050308 ; sugar-phosphatase activity ( supH )
 PID  
 EC number
  (KEGG Pathway)
 
 

 Linear View (Whole Mode)
View Location
   2030.0  –  2055.0 (KBP)

Homology Analysis
BLAST
    Bacteria
         GTOP  
    PDB     (database updated : 2007.02.20 )
        PSI-BLAST  
    SWISS-PROT     (database updated : 2007.02.20 )
        BLAST  
        PSI-BLAST
    nr     (database updated : 2007.02.20 )
        BLAST  
Pfam 28.0   (database updated : 2015-05 )
    Pfam
PROSITE
    PROSITE  

Other Cross-Reference
    EcoCyc serU 

MMBR References
Microbiol. Rev. 1988;52:354-374.
Transfer ribonucleic acid-mediated suppression of termination codons in Escherichia coli.
Eggertsson, G., and D. Soll.
J Mol Biol. 1990;212(4):579-98.
Genomic organization and physical mapping of the transfer RNA genes in Escherichia coli K12.
Komine Y, Adachi T, Inokuchi H, Ozeki H. ( 2184240 )
J Bacteriol. 1989;171(4):2090-5.
The Escherichia coli cell division mutation ftsM1 is in serU.
Leclerc G, Sirard C, Drapeau GR. ( 2649486 )
In D. Soll, J. Abelson, and P. Schimmel (ed.),Transfer RNA: biological aspects. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y. 1980:341-362
Genetics of nonsense suppressor tRNAs in Escherichia coli.
Ozeki, H., H. Inokuchi, F. Yamao, M. Kodaira, H. Sakano, T. Ikemura, and Y. Shimura.
Nucleic Acids Res. 1983;11:3823-3832
A nucleotide change in the anticodon of an Escherichia coli serine transfer RNA results in supD amber suppression.
Steege, D.
J Bacteriol. 1985;161(1):207-11.
Escherichia coli supH suppressor: temperature-sensitive missense suppression caused by an anticodon change in tRNASer2.
Thorbjarnardottir S, Uemura H, Dingermann T, Rafnar T, Thorsteinsdottir S, Soll D, Eggertsson G. ( 3155715 )

Sequences
Nucleotide
FASTA format

View sequence out neighbor 100bp
-100                                             taatcatcgt tttgctcgca aactcgtcac 
-070 ttgaacaaaa ttgcacggac agggactgtt aaaatgccaa atttcctggc atcatggcaa ccatctgaac 
0001 ggagagatgc cggagcggct gaacggaccg gtctcgaaaa ccggagtagg ggcaactcta ccgggggttc 
0071 aaatccccct ctctccgcca ctttatcaat gacttatctc ccgacttccc gccttgcttt tcctaaacag 
0141 aacaatcgta gaatattctt gaagggttag atcgtcactg ttttctgttc