|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Microbiol Mol Biol Rev. 1998;62(3):814-984
Linkage map of Escherichia coli K-12, edition 10: the traditional map.
Berlyn MK.
(
9729611
)
|
|
|
Deletion
|
OCR67
(D)
,
OCR67-3
(D)
,
OCR67-5
(D)
,
OCR68
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
tyrT
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
tyrT
Search strains by all related name:
tyrT b1231 ECK1226 JWR0029 su Su-3 Su-4 suIII supC supFsupO tyrTalpha
|
General information (Go to Linear View: )
|
|
tRNA Name
|
tyrT
|
|
Alternative name
|
b1231,ECK1226,JWR0029,su,Su-3,Su-4,suIII,supC,supFsupO,tyrTalpha
|
|
Location, Length
|
1,286,761 - 1,286,845
(
-
)
;
27.73
min
;
85
(bp) ,
|
|
Product
|
tRNA-Tyr
|
|
Operon Name
|
tyrTV-tpr
|
|
Note
|
anticodon: GUA
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
|
MMBR References
|
J Mol Biol. 1990;212(4):579-98.
Genomic organization and physical mapping of the transfer RNA genes in Escherichia coli K12.
Komine Y, Adachi T, Inokuchi H, Ozeki H.
(
2184240
)
|
Cell. 1979;16(3):523-34.
Structure and organization of the two tRNATyr gene clusters on the E. coli chromosome.
Rossi JJ, Landy A.
(
378394
)
|
Cell. 1981;26(3 Pt 1):305-14.
The tyrT locus: termination and processing of a complex transcript.
Rossi J, Egan J, Hudson L, Landy A.
(
7034960
)
|
J Bacteriol. 1993;175(23):7751-3.
Genetic map of the tyrT region of Escherichia coli from 27.1 to 27.7 minutes based exclusively on sequence data.
Bosl MR.
(
8244954
)
|
Nucleic Acids Res. 1991;19:5863-5870
A novel RNA product of the tyrT operon of Escherichia coli.
Bosl, M., and H. Kersten.
|
J Bacteriol. 1994;176:221-231
Organization and functions of genes in the upstream region of tyrT of Escherichia coli: phenotypes of mutants with partial deletion of a new gene (tgs).
Bosl, M., and H. Kersten.
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ttcatttttc tcaacgtaac actttacagc
-070 ggcgcgtcat ttgatatgat gcgccccgct tcccgataag ggagcaggcc agtaaaaagc attaccccgt
0001 ggtggggttc ccgagcggcc aaagggagca gactgtaaat ctgccgtcat cgacttcgaa ggttcgaatc
0071 cttcccccac caccataatt caccacagcg atgtggtaac ttcggtgaga ttgtgaaagt ttgcactcat
0141 cggggaaggg tgagaacctt cgactaaggt tcgattcgag cgaaa
|
