|
PEC Original Annotations
|
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Essentiality
|
|
Class
|
essential
|
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References (PMID)
|
|
|
Deletion
|
OCR56
(D)
,
OCR56-9
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
serT
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
serT
Search strains by all related name:
serT b0971 divE ECK0962 JWR0026
|
General information (Go to Linear View: )
|
|
tRNA Name
|
serT
|
|
Alternative name
|
b0971,divE,ECK0962,JWR0026
|
|
Location, Length
|
1,030,848 - 1,030,935
(
-
)
;
22.22
min
;
88
(bp) ,
|
|
Product
|
tRNA-Ser
|
|
Operon Name
|
serT
|
|
Note
|
anticodon: UGA
|
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Function
|
|
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Gene Ontology
|
|
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PID
|
|
EC number
(KEGG Pathway)
|
|
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
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PROSITE
|
|
PROSITE
|
|
|
MMBR References
|
J Mol Biol. 1990;212(4):579-98.
Genomic organization and physical mapping of the transfer RNA genes in Escherichia coli K12.
Komine Y, Adachi T, Inokuchi H, Ozeki H.
(
2184240
)
|
J Bacteriol. 1998;180:1389-1395
An rne-1 pnp-7 double mutation suppresses the temperature-sensitive defect of lacZ gene expression in a divE mutant.
Aiso, T., and R. Ohki.
|
EMBO J. 1984;3:1103-1107
The E. coli divE mutation, which differently inhibits synthesis of certain proteins, is in tRNA1Ser.
Tamura, F., S. Nishimura, and M. Ohki.
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ttatttcacg ctatcaatgc acttttggct
-070 gtttttcagg caaacaaaca aattaggggt ttacacgccg catcgggatg tttatagtgc gcgtcattcc
0001 ggaagtgtgg ccgagcggtt gaaggcaccg gtcttgaaaa ccggcgaccc gaaagggttc cagagttcga
0071 atctctgcgc ttccgccaaa taagataagg ggttagctaa atgctaaccc ctttttcttt tgcctgtcga
0141 aattctcagg gcgttatatt tgcttaatga cctgataatc cgctgtta
|
