|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Microbiol Mol Biol Rev. 1998;62(3):814-984
Linkage map of Escherichia coli K-12, edition 10: the traditional map.
Berlyn MK.
(
9729611
)
|
|
|
Deletion
|
OCR36
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
alaV
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
alaV
Search strains by all related name:
alaV b0203 ECK0203 JWR0003
|
General information (Go to Linear View: )
|
|
tRNA Name
|
alaV
|
|
Alternative name
|
b0203,ECK0203,JWR0003
|
|
Location, Length
|
225,500 - 225,575
(
+
)
;
4.86
min
;
76
(bp) ,
|
|
Product
|
tRNA-Ala
|
|
Operon Name
|
rrsH-ileV-alaV-rrlH-rrfH
|
|
Note
|
anticodon: UGC
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
|
MMBR References
|
J Bacteriol. 1982;149(2):458-68.
Chromosomal locations of the genes for rRNA in Escherichia coli K-12.
Ellwood M, Nomura M.
(
6173374
)
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TTAGAGCGCA CCCCTGATAA GGGTGAGGTC
-070 GGTGGTTCAA GTCCACTCAG GCCTACCAAA TTTGCACGGC AAATTTGAAG AGGTTTTAAC TACATGTTAT
0001 ggggctatag ctcagctggg agagcgcctg ctttgcacgc aggaggtctg cggttcgatc ccgcatagct
0071 ccaccaTCTC TGTAGTGGTT AAATAAAAAA TACTTCAGAG TGTACCTGCA AAGGTTCACT GCGAAGTTTT
0141 GCTCTTTAAA AATCTGGATC AAGCTGAAAA TTGAAA
|
